Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02419 and RBAM_014270

See Amino acid alignment / Visit BSNT_02419 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02419___ykqC.1.9828.seq
#    -bsequence dna-align/RBAM_014270___ykqC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02419___ykqC-RBAM_014270___ykqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02419___ykqC-RBAM_014270___ykqC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02419___ykqC
# 2: RBAM_014270___ykqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1669
# Identity:    1406/1669 (84.2%)
# Similarity:  1406/1669 (84.2%)
# Gaps:           2/1669 ( 0.1%)
# Score: 5966.0
# 
#
#=======================================

BSNT_02419___      1 ATGAAATTTGTAAAAAATGATCAGACTGCTGTTTTCGCCCTCGGAGGTTT     50
                     ||||||||||||||||||||.||||||||.||||||||||||||.||.||
RBAM_014270__      1 ATGAAATTTGTAAAAAATGACCAGACTGCCGTTTTCGCCCTCGGCGGATT     50

BSNT_02419___     51 GGGCGAAATCGGTAAAAATACGTACGCGGTGCAATTCCAGGATGAAATTG    100
                     ||||||.|||||.|||||||||||||.||||||.||.|||||||||||||
RBAM_014270__     51 GGGCGAGATCGGAAAAAATACGTACGGGGTGCAGTTTCAGGATGAAATTG    100

BSNT_02419___    101 TACTGATTGATGCGGGGATCAAGTTTCCCGAGGACGAACTGCTCGGAATT    150
                     ||||||||||||||||.||||||||.||.||.||.|||||.|||||.|||
RBAM_014270__    101 TACTGATTGATGCGGGAATCAAGTTCCCGGAAGATGAACTTCTCGGCATT    150

BSNT_02419___    151 GACTACGTCATCCCTGATTATACGTATTTAGTCAAAAACGAAGATAAAAT    200
                     ||.|||||.|||||.|||||.|||||||||||.|||||.|||||||||||
RBAM_014270__    151 GATTACGTAATCCCCGATTACACGTATTTAGTAAAAAATGAAGATAAAAT    200

BSNT_02419___    201 TAAAGGGCTTTTTATCACCCACGGGCACGAAGACCACATCGGCGGTATTC    250
                     ||||||.||.||||||||||||||.|||||||||||.|||||||||||||
RBAM_014270__    201 TAAAGGTCTGTTTATCACCCACGGTCACGAAGACCATATCGGCGGTATTC    250

BSNT_02419___    251 CATACCTGCTTAGACAAGTGAATATTCCTGTATACGGCGGAAAACTCGCG    300
                     |.||||||||.||||||||.||||||||.||.||||||||.|||||||||
RBAM_014270__    251 CGTACCTGCTCAGACAAGTAAATATTCCCGTTTACGGCGGTAAACTCGCG    300

BSNT_02419___    301 ATCGGCTTACTTCGGAATAAACTTGAAGAGCATGGATTATTAAGACAGAC    350
                     ||||||||||||||||||||||||||||||||.||..|.|||||||||||
RBAM_014270__    301 ATCGGCTTACTTCGGAATAAACTTGAAGAGCACGGGCTGTTAAGACAGAC    350

BSNT_02419___    351 GAAACTGAACATTATCGGCGAGGATGATATTGTAAAGTTCCGCAAAACGG    400
                     .|||.|.|||||.|||||.||.||.||.||.||.|||||||||||.||..
RBAM_014270__    351 CAAATTAAACATCATCGGTGAAGACGACATCGTGAAGTTCCGCAAGACAT    400

BSNT_02419___    401 CTGTGTCATTCTTCAGAACAACACACAGTATTCCGGATTCCTACGGCATT    450
                     ||||.||.|||||||||||.||||||||.|||||||||||.|||||.||.
RBAM_014270__    401 CTGTATCCTTCTTCAGAACGACACACAGCATTCCGGATTCATACGGAATC    450

BSNT_02419___    451 GTTGTAAAAACGCCGCCCGGAAACATCGTACATACTGGGGATTTTAAATT    500
                     ||.||.|||||.|||||.||.||.|||||||||||.|||||.|||||.||
RBAM_014270__    451 GTCGTCAAAACACCGCCGGGCAATATCGTACATACCGGGGACTTTAAGTT    500

BSNT_02419___    501 CGACTTTACTCCAGTCGGCGAGCCGGCAAACTTAACGAAAATGGCCGAAA    550
                     |||.||.||.||.||.|||||.|||||||||||.||.||.|||||.||||
RBAM_014270__    501 CGATTTCACACCGGTAGGCGAACCGGCAAACTTGACAAAGATGGCTGAAA    550

BSNT_02419___    551 TCGGTAAAGAAGGCGTTTTGTGCCTTCTTTCAGACAGCACAAACAGTGAA    600
                     ||||.||||||||||||.|||||||.|||||.|||||.|||||||||||.
RBAM_014270__    551 TCGGGAAAGAAGGCGTTCTGTGCCTGCTTTCTGACAGTACAAACAGTGAG    600

BSNT_02419___    601 AATCCGGAGTTTACCATGTCTGAGCGCCGTGTAGGAGAAAGCATTCATGA    650
                     ..|||.||.||.||||||||.||.|||||.|||||.|||||||||||.||
RBAM_014270__    601 GTTCCTGATTTCACCATGTCAGAACGCCGCGTAGGCGAAAGCATTCACGA    650

BSNT_02419___    651 CATTTTCCGCAAGGTGGACGGCCGAATTATCTTCGCTACATTTGCGTCGA    700
                     .||||||||.||.|||||||||.|||||||.||.||.|||||.||.||||
RBAM_014270__    651 TATTTTCCGAAAAGTGGACGGCAGAATTATATTTGCGACATTCGCTTCGA    700

BSNT_02419___    701 ATATTCACCG-CTTGCAGCAGGTAATTGAAGCTGCTGTACAAAATGGAAG    749
                     ||||.||||| ||| ||||||||.||||||||.||.||...|||.||.||
RBAM_014270__    701 ATATACACCGTCTT-CAGCAGGTGATTGAAGCAGCCGTTTTAAACGGCAG    749

BSNT_02419___    750 AAAAGTTGCCGTATTTGGACGCAGTATGGAATCGGCTATCGAAATTGGAC    799
                     |||||||||||||||.|||||||||||||||||||||||.|||||.||||
RBAM_014270__    750 AAAAGTTGCCGTATTCGGACGCAGTATGGAATCGGCTATTGAAATCGGAC    799

BSNT_02419___    800 AGACACTCGGTTATATTAACTGTCCTAAAAATACGTTTATTGAGCATAAC    849
                     |.|..||||||||.||||..||||||||||||||||||||||||||||||
RBAM_014270__    800 AAAATCTCGGTTACATTACTTGTCCTAAAAATACGTTTATTGAGCATAAC    849

BSNT_02419___    850 GAAATCAATCGTATACCTGCTAATAAAGTAACAATTTTATGTACAGGAAG    899
                     ||||||||||||.|.|||||.|||||||||||||||||||||||.|||||
RBAM_014270__    850 GAAATCAATCGTTTGCCTGCCAATAAAGTAACAATTTTATGTACGGGAAG    899

BSNT_02419___    900 CCAAGGGGAACCAATGGCGGCGTTATCAAGAATTGCAAACGGCACACACC    949
                     ||||||.|||||.|||||||||||||||.|.||.||.|||||.||.||||
RBAM_014270__    900 CCAAGGTGAACCGATGGCGGCGTTATCACGCATCGCTAACGGGACGCACC    949

BSNT_02419___    950 GCCAAATTTCAATCAATCCTGGGGATACAGTCGTATTTTCTTCATCCCCT    999
                     |.||.|||||.||.|||||.||.|||||.|||||.||||||||.||.||.
RBAM_014270__    950 GGCAGATTTCCATTAATCCCGGAGATACGGTCGTCTTTTCTTCCTCTCCG    999

BSNT_02419___   1000 ATCCCAGGCAACACAATCAGCGTGAGTCGAACAATCAACCAGCTGTATCG   1049
                     ||.||.||.||||||||||||||.||.||.||.||||||||||||||.||
RBAM_014270__   1000 ATTCCCGGAAACACAATCAGCGTAAGCCGCACCATCAACCAGCTGTACCG   1049

BSNT_02419___   1050 TGCGGGTGCTGAGGTTATTCATGGCCCTCTTAACGATATCCATACATCCG   1099
                     ||||||.||.||.||.|||||.||..|..|.||.||.||.||||||||||
RBAM_014270__   1050 TGCGGGCGCAGAAGTCATTCACGGTTCATTGAATGACATTCATACATCCG   1099

BSNT_02419___   1100 GTCACGGCGGACAGGAAGAACAGAAGCTGATGCTTCGTTTAATCAAACCT   1149
                     |.|||||||||||||||||.|||||..|.|||||.||..|.||||||||.
RBAM_014270__   1100 GACACGGCGGACAGGAAGAGCAGAAATTAATGCTCCGCCTGATCAAACCG   1149

BSNT_02419___   1150 AAATTCTTCATGCCGATTCACGGTGAGTACAGAATGCAAAAGATGCATGT   1199
                     ||.|||||.|||||||||||||||||||||||||||||.||.|||||.||
RBAM_014270__   1150 AAGTTCTTTATGCCGATTCACGGTGAGTACAGAATGCAGAAAATGCACGT   1199

BSNT_02419___   1200 CAAACTTGCAACAGATTGTGGCATCCCAGAGGAAAACTGCTTTATCATGG   1249
                     ||||||.||.||.|||||.|||||.||.||.|||||||||||||||||||
RBAM_014270__   1200 CAAACTCGCGACTGATTGCGGCATACCCGAAGAAAACTGCTTTATCATGG   1249

BSNT_02419___   1250 ATAATGGTGAAGTATTAGCGCTTAAAGGCGACGAGGCTTCAGTTGCAGGA   1299
                     |||||||.|||||..|.||.||.||||||||.||.||..|.||.|||||.
RBAM_014270__   1250 ATAATGGCGAAGTGCTGGCCCTCAAAGGCGAAGAAGCCGCTGTGGCAGGC   1299

BSNT_02419___   1300 AAAATCCCGTCCGGTTCAGTGTACATTGACGGAAGCGGTATCGGTGATAT   1349
                     |||||.||||||||.||.||.|||||||||||||||||.|||||||||||
RBAM_014270__   1300 AAAATTCCGTCCGGCTCCGTTTACATTGACGGAAGCGGAATCGGTGATAT   1349

BSNT_02419___   1350 TGGCAATATCGTACTTCGTGATCGCAGAATTCTCTCTGAAGAAGGACTTG   1399
                     .|||||||||||.||.||.||.|||.|.|||||.||.||||||||.||||
RBAM_014270__   1350 CGGCAATATCGTGCTCCGCGACCGCCGCATTCTTTCAGAAGAAGGCCTTG   1399

BSNT_02419___   1400 TCATCGTTGTTGTCAGCATTGACATGGACGACTTCAAGATTTCAGCGGGT   1449
                     |.|||||||||||||||||..|.|||||.|||||.|.|.||||.|||||.
RBAM_014270__   1400 TTATCGTTGTTGTCAGCATCAATATGGATGACTTTAGGGTTTCGGCGGGG   1449

BSNT_02419___   1450 CCAGATTTGATTTCCAGAGGATTTGTGTACATGAGAGAATCTGGCGACTT   1499
                     ||.|||||.||.||.|||||.|||||.||||||||||||||.||.||.||
RBAM_014270__   1450 CCTGATTTAATCTCAAGAGGTTTTGTATACATGAGAGAATCCGGTGATTT   1499

BSNT_02419___   1500 GATCAACGACGCTCAAGAGCTCATTTCAAATCACTTACAAAAAGTAATGG   1549
                     ||||||.|||||.||..|||||||||||||.||..|..|.||||||||||
RBAM_014270__   1500 GATCAATGACGCGCAGCAGCTCATTTCAAACCATCTGGAGAAAGTAATGG   1549

BSNT_02419___   1550 AACGAAAAACGACTCAATGGTCTGAAATCAAAAACGAGATTACAGACACT   1599
                     |.||.|||||.||.||.|||||.|||||.||||||||.|||||.||.||.
RBAM_014270__   1550 ATCGGAAAACAACGCAGTGGTCCGAAATTAAAAACGAAATTACCGATACA   1599

BSNT_02419___   1600 CTTGCGCCTTTCTTGTACGAAAAAACAAAGCGCCGTCCTATGATCCTGCC   1649
                     |||||.||.|||.|.||||||||||||||.|||||.||.||||||||.||
RBAM_014270__   1600 CTTGCTCCGTTCCTATACGAAAAAACAAAACGCCGCCCGATGATCCTTCC   1649

BSNT_02419___   1650 GATCATTATGGAGGTTTAA   1668
                     |||||||||||||||.|||
RBAM_014270__   1650 GATCATTATGGAGGTCTAA   1668


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