Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02428 and RBAM_014310

See Amino acid alignment / Visit BSNT_02428 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02428.1.9828.seq
#    -bsequence dna-align/RBAM_014310___ykyA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02428-RBAM_014310___ykyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02428-RBAM_014310___ykyA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02428
# 2: RBAM_014310___ykyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity:     277/686 (40.4%)
# Similarity:   277/686 (40.4%)
# Gaps:         301/686 (43.9%)
# Score: 703.0
# 
#
#=======================================

BSNT_02428         0 --------------------------------------------------      0
                                                                       
RBAM_014310__      1 ATGATTCAAAAAAAGGTATTAGCAGGAATCGGAGCGCTCGGCGCCGCAAG     50

BSNT_02428         0 --------------------------------------------------      0
                                                                       
RBAM_014310__     51 TATGCTTCTTGCCGGCTGCGGGGGAAAAGATCCGGCTGAATCGCTTCATG    100

BSNT_02428         0 --------------------------------------------------      0
                                                                       
RBAM_014310__    101 ACTCGATGGAAAAAGCCGTTCAAGCGGAAAAACCGTTTCAAAAAGAGCAG    150

BSNT_02428         0 --------------------------------------------------      0
                                                                       
RBAM_014310__    151 AAAACATTAGAAAAATTGGAGAAAAAAGAGCATAAGCTATACGACAGCGC    200

BSNT_02428         1 --------------------------------TTGTTGCTTTATCTAATT     18
                                                     ||||..|..|.|||.| |
RBAM_014310__    201 GGTTAAACTGAATATGGATGATTACCAGAAAATTGTCACACTGTCTGA-T    249

BSNT_02428        19 AAGGCGCT------TGAAAATGTCAGC-AAGCGCGAAGAACACCT-AAAG     60
                     .||||.||      ||.|||  ||||| ||     ||.||||.|| ||||
RBAM_014310__    250 CAGGCTCTGAGCAATGCAAA--TCAGCGAA-----AAAAACATCTGAAAG    292

BSNT_02428        61 CTTGAAAATGACAGCATGAAAAAATCGGAAACAGAATTTGA----GGAAG    106
                     | .|||||.|||||.||..|..|.||..|||.||..|||||    |.|| 
RBAM_014310__    293 C-AGAAAAAGACAGTATTGATGATTCAAAAAAAGCGTTTGAATCCGCAA-    340

BSNT_02428       107 CAAAAACGTCAGCGGAACATATTAAGGAAAAAGACA-TAAAAGAAAAGGC    155
                     .||||||.|   |..||.|.||.|||| |.||||.| ||||||||||.||
RBAM_014310__    341 AAAAAACTT---CTCAAGAAATAAAGG-ATAAGAAAGTAAAAGAAAAAGC    386

BSNT_02428       156 CG---ATGCCGCAGCAAACCAT---ATGGAGAAAAGATATACATCATATG    199
                     ||   ||||.|..||      |   |||||||||||.|||.||||.||||
RBAM_014310__    387 CGGGCATGCTGTCGC------TTTAATGGAGAAAAGGTATGCATCTTATG    430

BSNT_02428       200 GCACTATGTATAAAGAGTATAAAAAAG-CACTTGAGCTTAATAAAAAACT    248
                     ....|.||||.|||.||||..|||||| ||.||.| |||.||||..|.||
RBAM_014310__    431 ATCTTTTGTACAAAAAGTACGAAAAAGCCATTTCA-CTTGATAAGGACCT    479

BSNT_02428       249 GTATATGCAGCTGAAAGACAAAGATTTGACAAGAGATGATCTGGATCAGC    298
                     .||||..|.|.|.|||||.|||.|..|.|||..||...|.|||||..|||
RBAM_014310__    480 TTATAAACTGATTAAAGATAAAAAGCTCACATTAGCGCAGCTGGAAGAGC    529

BSNT_02428       299 AGATCGATAAAGTCAATGCTTCTTATGAAAAGATCCTTAAATATAGCGGA    348
                     |.|||...|||||.||..|...|||.||||||.|.|.||||.| |||.||
RBAM_014310__    530 AAATCAGCAAAGTAAACTCAGTTTACGAAAAGGTGCATAAACA-AGCAGA    578

BSNT_02428       349 -GAATTTAATGAACAAACCGAAAAATATAATAAAGCCCGGGAAGATTTA-    396
                      ||.||.|||.||...||..||.|.||.||.||||   .|.||||   | 
RBAM_014310__    579 TGAGTTCAATCAATTTACTAAAGACTACAACAAAG---AGAAAGA---AC    622

BSNT_02428       397 TATGATGCTGCAGGCTATCGTGTGAAAAAGAGCTGA    432
                     |||.||.||||             |||.||      
RBAM_014310__    623 TATTATTCTGC-------------AAATAG------    639


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