Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02449 and RBAM_014550

See Amino acid alignment / Visit BSNT_02449 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_02449___nprE.1.9828.seq
#    -bsequence dna-align/RBAM_014550___nprE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02449___nprE-RBAM_014550___nprE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02449___nprE-RBAM_014550___nprE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02449___nprE
# 2: RBAM_014550___nprE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1594
# Identity:    1206/1594 (75.7%)
# Similarity:  1206/1594 (75.7%)
# Gaps:          56/1594 ( 3.5%)
# Score: 4446.0
# 
#
#=======================================

BSNT_02449___      1 GTGGGTTTAGGTAAGAAATTGTCTGTTGCTGTCGCTGCTTCGTTTATGAG     50
                     |||||||||||||||||||||||||||||||||||.|||||.||||||||
RBAM_014550__      1 GTGGGTTTAGGTAAGAAATTGTCTGTTGCTGTCGCCGCTTCCTTTATGAG     50

BSNT_02449___     51 TTTATCAATCAGCCTTCCTGGTGTTCAGGCTGCTGAAGGTCATCAGCTTA    100
                     ||||.|.|||||.|||||.|||||||||||.|||||...||.||||||||
RBAM_014550__     51 TTTAACTATCAGTCTTCCGGGTGTTCAGGCCGCTGAGAATCCTCAGCTTA    100

BSNT_02449___    101 AAGAGAATCAAACAAATTTCCTCT-CCAAAAACGCGATT-----GCGCAA    144
                     ||||.||.|..||.||.||  |.| ||.||   || |||     |.|||.
RBAM_014550__    101 AAGAAAACCTGACGAACTT--TGTGCCGAA---GC-ATTCTTTGGTGCAG    144

BSNT_02449___    145 TCAGAACTCTCTGCACCAAATGACAAGGCTGTCAAGCAGTTTTTGAAAAA    194
                     ||.||..|..||.||...|.||||||.||..|||||||.|..||||||.|
RBAM_014550__    145 TCTGAGTTGCCTTCAGTCAGTGACAAAGCAATCAAGCAATACTTGAAACA    194

BSNT_02449___    195 GAACAGCAACATTTTTAAAGGTGACCCTTCCAAAAGGCTGAAGCTTGTTG    244
                     .|||.||||..|.||.|||||..|||||||..|.||.||||||||..|||
RBAM_014550__    195 AAACGGCAAAGTCTTCAAAGGCAACCCTTCTGAGAGACTGAAGCTGATTG    244

BSNT_02449___    245 AAAGCACGACTGATGCCCTTGGATACAAACACTTTCGATATGCGCCTGTC    294
                     |...||||||.||||..||.||.|||||.|||||.||.||||.|||||||
RBAM_014550__    245 ACCACACGACCGATGATCTCGGCTACAAGCACTTCCGTTATGTGCCTGTC    294

BSNT_02449___    295 GTTAACGGAGTGCCAATTAAAGATTCGCAAGTGATCGTTCACGTCGATAA    344
                     ||||||||.|||||..|.|||||.||||||||.||..|||||||||||||
RBAM_014550__    295 GTTAACGGTGTGCCTGTGAAAGACTCGCAAGTCATTATTCACGTCGATAA    344

BSNT_02449___    345 ATCCGATAATGTCTATGCGGTCAATGGTGAATTACACAATCAAT-CTGCT    393
                     ||||.|.||||||||||||.|.||.|||||||||.|||| |.|| ||.||
RBAM_014550__    345 ATCCAACAATGTCTATGCGATTAACGGTGAATTAAACAA-CGATGCTTCT    393

BSNT_02449___    394 GCAAAAACAGATAACAGCCAAAAAGTCTCTTCTGAAA--AAGCGCTGGCA    441
                     ||.|||||.|..||||||.|||||.|.|||.|  |||  |.|||||||..
RBAM_014550__    394 GCCAAAACGGCAAACAGCAAAAAATTATCTGC--AAATCAGGCGCTGGAT    441

BSNT_02449___    442 CTCGCTTTCAAAGCTATCGGCAAATCACCAGACGCTGTTTCTAACGGAGC    491
                     |..|||||.|||||.||||||||||||||.||.||.||.||||||||   
RBAM_014550__    442 CATGCTTTTAAAGCAATCGGCAAATCACCTGAAGCCGTCTCTAACGG---    488

BSNT_02449___    492 GGCCAA------AAACAGCAATAAAGCCGAATTGAAAGCGATAGAAACAA    535
                        |||      |||||..||.||||||||..|||||||....|..||||
RBAM_014550__    489 ---CAACGTTGCAAACAAAAACAAAGCCGAGCTGAAAGCAGCGGCCACAA    535

BSNT_02449___    536 AGGACGGCAGCTATCGTCTTGCTTACGACGTGACGATTCGCTATGTCGAG    585
                     |.|||||.|..||.||.||.||.||.||.||.||.||.|||||..||||.
RBAM_014550__    536 AAGACGGTAAATACCGCCTCGCCTATGATGTAACCATCCGCTACATCGAA    585

BSNT_02449___    586 CCTGAACCTGCAAACTGGGAAGTCTTAGTTGACGCTGAAACAGGCAGCAT    635
                     ||.|||||.||.|||||||||||....|||||.||.||||||||.|...|
RBAM_014550__    586 CCGGAACCAGCTAACTGGGAAGTAACCGTTGATGCGGAAACAGGGAAAGT    635

BSNT_02449___    636 TTTAAAACAGCAAAATAAAGTAGAACATGCCGCCGCCACTGGAAGCGGGA    685
                     ..|.|||.|||||||.|||||.||.|||||.||.||.||.||||..||.|
RBAM_014550__    636 CCTGAAAAAGCAAAACAAAGTGGAGCATGCAGCTGCAACCGGAACAGGTA    685

BSNT_02449___    686 CAACTCTAAAGGGCGCAACTGTTCCTTTGAACATCTCTTATGAAGGCGGA    735
                     |.|||||.||.||...|||.||..|.||.||.||.||||.||||.||||.
RBAM_014550__    686 CGACTCTTAAAGGAAAAACGGTCTCATTAAATATTTCTTCTGAAAGCGGC    735

BSNT_02449___    736 AAATATGTTCTAAGAGATCTTTCAAAACCAACAGGCACCCAAATCATCAC    785
                     ||||||||..|..|.||||||||.|||||.||.||.||.|||||.||.||
RBAM_014550__    736 AAATATGTAATGCGTGATCTTTCTAAACCTACCGGAACGCAAATTATTAC    785

BSNT_02449___    786 ATATGATTTGCAAAACAGACA----AAGCCGCCTTCCGGGCACGCTTGTC    831
                     .||.|||.||||||||.||||    ||    |||.||||||||.||.||.
RBAM_014550__    786 GTACGATCTGCAAAACCGACAATATAA----CCTGCCGGGCACACTCGTA    831

BSNT_02449___    832 TCAAGCACAACGAAAACA-TTTACATCTTCATCACAGCGGGCAGCCGTTG    880
                     ||||||||.|| .||.|| ||.|||.||||.||.|||||.||.|||||||
RBAM_014550__    832 TCAAGCACTAC-CAACCAGTTCACAACTTCTTCTCAGCGCGCTGCCGTTG    880

BSNT_02449___    881 ACGCACACTATAACCTCGGTAAAGTGTACGATTATTTTTATTCAAAC-TT    929
                     |.||.||.||.||.|||||.|||||||||||||||||.|| |||.|| ||
RBAM_014550__    881 ATGCGCATTACAATCTCGGCAAAGTGTACGATTATTTCTA-TCAGACGTT    929

BSNT_02449___    930 TAAACGAAACAGCTATGATAACAGAGGCAGTAAAATCGTTTCTTCCGTTC    979
                     ||||||.|||||.||.||.||.|.||||.|.||||||||.||||||||||
RBAM_014550__    930 TAAACGCAACAGTTACGACAATAAAGGCGGCAAAATCGTATCTTCCGTTC    979

BSNT_02449___    980 ACTACGGCACTCAATACAATAACGCTGCATGGACAGGAGACCAGATGATT   1029
                     |.|||||||...|||||||||||||.||.||||..||.|||||.||||||
RBAM_014550__    980 ATTACGGCAGCAAATACAATAACGCGGCCTGGATCGGCGACCAAATGATT   1029

BSNT_02449___   1030 TACGGTGATGGCGACGGTTCATTCTTCTCTCCGCTTTCCGGCTCATTAGA   1079
                     ||||||||.||.|||||.|||||||||||.||.||||||||.|||.|.||
RBAM_014550__   1030 TACGGTGACGGTGACGGCTCATTCTTCTCGCCTCTTTCCGGTTCAATGGA   1079

BSNT_02449___   1080 TGTGACAGCGCATGAAATGACACATGGCGTCACCCAAGAAACAGCCAACT   1129
                     .||.||.||.||||||||||||||.||.||.||.||.||||||||||||.
RBAM_014550__   1080 CGTAACGGCCCATGAAATGACACACGGTGTTACACAGGAAACAGCCAACC   1129

BSNT_02449___   1130 TGATTTATGAAAATCAGCCAGGTGCATTAAACGAGTCTTTCTCTGACGTA   1179
                     |.|..||||||||||||||.||.||.||||||||.||.||||||||.|||
RBAM_014550__   1130 TAAACTATGAAAATCAGCCGGGCGCTTTAAACGAATCCTTCTCTGATGTA   1179

BSNT_02449___   1180 TTCGGGTATTTTAACGATACAGAAGACTGGGACATCGGTGAAGACATTAC   1229
                     |||||.||.||.||.|||||.||.||||||||.|||||||||||.|||||
RBAM_014550__   1180 TTCGGATACTTCAATGATACTGAGGACTGGGATATCGGTGAAGATATTAC   1229

BSNT_02449___   1230 GGTCAGCCAGCCTGCTCTTCGCAGCCTGTCCAACCCTACAAAATACAACC   1279
                     ||||||||||||.|||||.|||||..|.||.|..||.|||||||||...|
RBAM_014550__   1230 GGTCAGCCAGCCGGCTCTCCGCAGTTTATCTACTCCGACAAAATACGGAC   1279

BSNT_02449___   1280 AGCCTGACAATTACGCCAATTA-CAGAAACCTTCCAAACACAGATGAAGG   1328
                     ||||.|||.|||||...||||| || |||||||||.|||||.||||..||
RBAM_014550__   1280 AGCCCGACCATTACAAAAATTATCA-AAACCTTCCGAACACTGATGCCGG   1328

BSNT_02449___   1329 CGATTATGGCGGTGTACACACAAACAGCGGAATTCCAAACAAAGCCGCTT   1378
                     |||.||.|||||.||.||.|||||||||||||||||.|||||||||||||
RBAM_014550__   1329 CGACTACGGCGGCGTGCATACAAACAGCGGAATTCCGAACAAAGCCGCTT   1378

BSNT_02449___   1379 ACAACACCATCACAAAACTTGGTGTATCTAAATCACAGCAAATCTATTAC   1428
                     |||||||.||.||.|||.|.||.||....|||.|..||||.||.||.||.
RBAM_014550__   1379 ACAACACGATTACTAAAATCGGCGTGAAAAAAGCGGAGCAGATTTACTAT   1428

BSNT_02449___   1429 CGTGCGTTAAC-AACG---TACCTCACGCCTTCTTCCACGTTCAAAGATG   1474
                     ||.||    || ||||   ||.|||||.||.||.||.|..||.|||||||
RBAM_014550__   1429 CGCGC----ACTAACGGTATATCTCACTCCGTCATCAAACTTTAAAGATG   1474

BSNT_02449___   1475 CCAAGGCAGCTCTCATTCAGTCTGCCCGTGACCTCTACGG--CTCAACTG   1522
                     |.||.||||||.|.|||||.||.||.||.|||||.|||||  |||||  |
RBAM_014550__   1475 CAAAAGCAGCTTTGATTCAATCAGCGCGGGACCTTTACGGCTCTCAA--G   1522

BSNT_02449___   1523 ATGCCGCTAAAGTTGAAGCAGCCTGGAATGCTGTTGGATTGTAA   1566
                     |.||.||.|..||.|||||.|||||||||||.||.||.||||||
RBAM_014550__   1523 ACGCTGCAAGCGTAGAAGCGGCCTGGAATGCGGTCGGCTTGTAA   1566


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