Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02450 and RBAM_014560

See Amino acid alignment / Visit BSNT_02450 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_02450___ylaA.1.9828.seq
#    -bsequence dna-align/RBAM_014560___ylaA1.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02450___ylaA-RBAM_014560___ylaA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02450___ylaA-RBAM_014560___ylaA1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02450___ylaA
# 2: RBAM_014560___ylaA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2038
# Identity:     715/2038 (35.1%)
# Similarity:   715/2038 (35.1%)
# Gaps:        1073/2038 (52.6%)
# Score: 1903.0
# 
#
#=======================================

BSNT_02450___      1 ---TTGGAGTTATTCAGTCATTATGTATT--GCATTTCGAACGTTATTTT     45
                        |..|||.|.|||||||||  |.||||  |||||||||..|.|||||.
RBAM_014560__      1 ATGTCAGAGATTTTCAGTCAT--TTTATTCAGCATTTCGACAGGTATTTC     48

BSNT_02450___     46 ATATTAAGCAGACAAAGCACCCTGCTGATTCAATGGTCA---------AT     86
                     ||.|||||||||||.|||....||.|.|||||.||||||         .|
RBAM_014560__     49 ATTTTAAGCAGACAGAGCGTGTTGATCATTCAGTGGTCAGCCGTCTGCCT     98

BSNT_02450___     87 TGTTGTTCTGGCGGGCTTATA-------TCTTTTGGTGCATCATCCCAAA    129
                     ||.||||         |||||       .||||       ||||||.|||
RBAM_014560__     99 TGCTGTT---------TTATACGCGCTGACTTT-------TCATCCGAAA    132

BSNT_02450___    130 ATAAACCTGCAGCGCACAATGTTCTTG-GCGGGT---GTTATGTTGCGG-    174
                     ||       ||||          |.|| |.|.||   |||.|.||..|| 
RBAM_014560__    133 AT-------CAGC----------CGTGAGAGAGTTTGGTTTTATTCAGGA    165

BSNT_02450___    175 ATTGTGCT----GC--------TGGCGGGAGTGTCTGTTGAACTTATTCA    212
                     |||.||||    ||        |.|||||..|..|.||||||.|..||||
RBAM_014560__    166 ATTCTGCTCAGGGCCGTATTATTAGCGGGCATAACAGTTGAATTGGTTCA    215

BSNT_02450___    213 CCAGGTGCAATCAACAAACTTCACCAGCGC-TTACTTAAGAGAGGACGGA    261
                     .||||||||....||..||||.|.| |||| .||.||.|.|..|||.|.|
RBAM_014560__    216 TCAGGTGCAGAGTACTCACTTTAGC-GCGCACTATTTGATATCGGAAGAA    264

BSNT_02450___    262 AAAGAACTGTTGCCGCTGCTGCATTTTTTGTTATACGGATATGTGCTGCT    311
                     |.|||.||..|.|||.|..|.|||.|.||..|.||.||.|||||||||||
RBAM_014560__    265 AGAGAGCTTCTTCCGATCGTTCATCTCTTAATGTATGGGTATGTGCTGCT    314

BSNT_02450___    312 GACGGCTTTTCACTATATGTTGATGCCGCGTGATCATGGCGGAAAGGGTA    361
                     .||.||.||||||||||||.|.||||||||.||.||..|.||||||||.|
RBAM_014560__    315 CACCGCGTTTCACTATATGCTCATGCCGCGGGAGCAGAGGGGAAAGGGCA    364

BSNT_02450___    362 AGTTTTATACGTTCGACCTTGCCGTTGTCAGTTTGCCAATCGTACAAATG    411
                     .||||||||||||.||.||..|.||.||.|...||||..||.|.||..||
RBAM_014560__    365 TGTTTTATACGTTTGATCTCACTGTGGTGACACTGCCGGTCATTCAGCTG    414

BSNT_02450___    412 ATATTCAGTTTCTTTACGTATTGGAAGGAAAATCCGGAT-----------    450
                     ||.|||||.||.||..|.|..|||||....|.|||.|||           
RBAM_014560__    415 ATCTTCAGCTTTTTCGCTTTCTGGAATATCAGTCCCGATGCGATGGCGGG    464

BSNT_02450___    451 GGAGTCGAGCCAGTTGCATTCG-TGTTTCTGTTTTTCATTA--------T    491
                     ||||  ||...|||    |||| ||   ||.|.|||.||||        |
RBAM_014560__    465 GGAG--GATATAGT----TTCGATG---CTATGTTTTATTACGGTTGTTT    505

BSNT_02450___    492 TACT-------CTTTCTATTGTGTTGAATGTTGTGTTTTTCAAGCTGTAT    534
                     ||||       .||||||      ||||||||.|.||.||.||..|||||
RBAM_014560__    506 TACTTCTGCTGATTTCTA------TGAATGTTTTATTCTTTAAAATGTAT    549

BSNT_02450___    535 TGGAGAAC--AAATAAGATTTTACTAGGCTTATTTTATACGCT--GATTA    580
                     |||| |||  |.|...|.||||| |.|||.|.||||||  |||  |.|.|
RBAM_014560__    550 TGGA-AACCGAGACCTGTTTTTA-TCGGCGTGTTTTAT--GCTGGGGTCA    595

BSNT_02450___    581 TCGGACTGCTTGTCTTGCTGCT---TGCGCCATATCCCAATCAAATCTCA    627
                     ||||.|||.|.||.|.|.||||   ||||||.|...||..|..||   ||
RBAM_014560__    596 TCGGGCTGTTGGTGTGGGTGCTCGCTGCGCCCTCGGCCGGTGTAA---CA    642

BSNT_02450___    628 AAAGATTATGGTGCAG--TAATGCCATATACGATTTATTTGGCAATGGCG    675
                     ||||||||.|  ||||  |..|.||||.||||.|.|||||..|.|||||.
RBAM_014560__    643 AAAGATTACG--GCAGACTTCTCCCATTTACGGTGTATTTAACGATGGCC    690

BSNT_02450___    676 GGATTTTTGATGAGCTATCATCTGTTCCAAAAGTCAGGAAAGGTTTATG-    724
                     ||.|||.||||||.|.|||||.|.||.||...|||| ||.|||.|.| | 
RBAM_014560__    691 GGTTTTCTGATGACCCATCATTTATTTCATCGGTCA-GACAGGATCA-GA    738

BSNT_02450___    725 -TGCGTGTGAATAA-------GTGGGTGACGATGGCTGTCATGGTGTTTT    766
                      .|||...|||.||       |.|||.| |.|.|||.|  .|||| |||.
RBAM_014560__    739 CAGCGGACGAAAAACTTTCTTGCGGGAG-CAACGGCCG--CTGGT-TTTA    784

BSNT_02450___    767 TTGTCCTGCTGTTAAATCCGATATATAACATAGGAACGGCTGCTTTCGCT    816
                     |||||   .|.||.||||||.||||.||....|||...||.|||||.||.
RBAM_014560__    785 TTGTC---TTTTTGAATCCGGTATACAATGCGGGAGATGCCGCTTTTGCG    831

BSNT_02450___    817 GTATCAAAACCGATAAATGTC-CATGATTCATTCAATTATGTCGGGGA--    863
                     ||.|||||.||    ||||.| .|.|||.|         |||.|.|||  
RBAM_014560__    832 GTTTCAAAGCC----AATGGCTGAAGATAC---------TGTTGAGGATG    868

BSNT_02450___    864 -----GCACATTTCA--TCAGAAAAAGCGGAACAGATACTAAAGTCATTT    906
                          |.||||.|||  |||||..|||||||||.|||.||.|..||||||
RBAM_014560__    869 TTGGTGGACATATCACTTCAGACCAAGCGGAACGGATCCTTACATCATTT    918

BSNT_02450___    907 TTTCCTACGGATGAAACAC--TTTATTTGCAC-GATA-CAAACATGGATG    952
                     |||||..|.|| |||.| |  ||||||| .|| ||.| |||.|| ||||.
RBAM_014560__    919 TTTCCGGCAGA-GAATC-CGATTTATTT-AACAGAAACCAATCA-GGATC    964

BSNT_02450___    953 TGCATTATTTCTACTCATTTGAAA--GCAAGAGTTATAAAGCTGAGGTAG   1000
                     |.|||||.||.||| |.|||.|||  |.|||| ||||.||||.||.||.|
RBAM_014560__    965 TCCATTACTTTTAC-CGTTTTAAAACGAAAGA-TTATGAAGCGGAAGTGG   1012

BSNT_02450___   1001 ATGAAGTATCGCAGCTGATTCGTAATTATGAATA-CTTACAAA----AAG   1045
                     |.||.||.||.|...|||||...|||||..|||| ||||.|||    |||
RBAM_014560__   1013 ACGAGGTTTCCCGATTGATTACAAATTACCAATATCTTAAAAACCGGAAG   1062

BSNT_02450___   1046 --CGCATGGGAAAAAGC--TAACGAATCAGGAGTACAAGCGAAAGTCCAT   1091
                       ||||          |  |||                            
RBAM_014560__   1063 GCCGCA----------CTTTAA----------------------------   1074

BSNT_02450___   1092 CGCTTTCCTTGAGCGACACGGACGTGTGTTACATAAGGATCATATCGAAA   1141
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1142 CAAAGGTATCTCAAGAAGACGGCCAGACAGTCGTACGTATTTACCTGAAA   1191
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1192 AATCAACTTCATAAAAAAGATCATGCTGATGATGGCGCGGTATTTTATTG   1241
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1242 GGAAAAGGAAACCTTAATGGGGTTTAGTGAAGATCCTTCGATTTATCAGC   1291
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1292 TTGACTCTCTTCTGCATGTTCATATAACAGAACAAAACATTCACGATAAA   1341
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1342 GTGGAACAAATGTTTACAGCGCTGAACATATCAAAACAGCCTTATCAGAT   1391
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1392 CACTGATATTGAAAGCGACAGCCTGCTCGGAAGCATGGTGAGAGTTGAAA   1441
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1442 CAAAAGATGGAATTGTATTGGAGTTTGATGGAGAATCCGGTAGTTTACAC   1491
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1492 AGTCTCTCGATTCCAATGAAAAAGGAAATTTCACTGACTAACAGCCGGCT   1541
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1542 GCAGCGGCAGGTATTAACGGTCTTCGATGCTGATGTATCAGAAATGAAGA   1591
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1592 AAAAAAGCAGTCAGAGTGACATGGTGATGTATACTGATTCTTCTAAAACA   1641
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1642 TATGAGTTTTTTGAAGATCAAGGTCAGCTAAACGTTTATGTATACAGCGA   1691
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1692 TACACCTAATCAGTCATTCCCCTATACGTATCGTAATGGAACATTGGCTT   1741
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1742 ACGAAAAGGTAGCTTCTCTATATCAGGATGTTATTTACAAAAAGCGTATG   1791
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1792 CGTCCGATTATCGTTCAAAGAGAGGATGAACGGCATTATGCATGGCTGAT   1841
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1842 CATTATTCAGCCGTTTGGTTCAAATCGCCATGATGCCTATGTAGTGGATG   1891
                                                                       
RBAM_014560__   1074 --------------------------------------------------   1074

BSNT_02450___   1892 GAGAAACACAAGAGGTGAAAAGTCTTTATGAATCATAA   1929
                                                           
RBAM_014560__   1074 --------------------------------------   1074


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