Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02464 and RBAM_014680

See Amino acid alignment / Visit BSNT_02464 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:12
# Commandline: needle
#    -asequence dna-align/BSNT_02464___ylaL.1.9828.seq
#    -bsequence dna-align/RBAM_014680___ylaL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02464___ylaL-RBAM_014680___ylaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02464___ylaL-RBAM_014680___ylaL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02464___ylaL
# 2: RBAM_014680___ylaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity:     339/527 (64.3%)
# Similarity:   339/527 (64.3%)
# Gaps:          91/527 (17.3%)
# Score: 1109.5
# 
#
#=======================================

BSNT_02464___      1 ATGAGCGTTATCCAAGTAAAAGGCAATGTTACATATCCAATTACCATTGA     50
                     |||||||||||.|||||||||||||||||||||||.||.|||||.|||||
RBAM_014680__      1 ATGAGCGTTATTCAAGTAAAAGGCAATGTTACATACCCGATTACAATTGA     50

BSNT_02464___     51 TCCAAGCGTATGGATTTTTGATGATCGCAAATTTTCGTTTGACCGCAAAG    100
                     |||.||.||.||||||||.|||||.|||||.|||.|||||||        
RBAM_014680__     51 TCCGAGTGTCTGGATTTTCGATGACCGCAAGTTTCCGTTTGA--------     92

BSNT_02464___    101 GGGACAGTCAAGACACATATTTACAATCAGCCGG-------GGA------    137
                              ||           |.||||||||.|       |||      
RBAM_014680__     93 ---------AA-----------AAAATCAGCCCGTTCATCCGGACGGCTC    122

BSNT_02464___    138 ---TGAATCCGA---------CCTTGATCCGGAACGCGTCATCAGAGAGG    175
                        .|||.||.|         .||||||||||||||.||.||||||||.|
RBAM_014680__    123 TGCAGAAACCCAGGAGCATACGCTTGATCCGGAACGGGTGATCAGAGAAG    172

BSNT_02464___    176 GGCGAATTGCCCCGCCTACATTAAAGACGGAAAAACAATATGAGAAGCAA    225
                     ||||.|||.|.|||||.||.|||||.|..|||||||..|||||.||..||
RBAM_014680__    173 GGCGCATTTCGCCGCCGACTTTAAAAAGCGAAAAACGTTATGAAAAAGAA    222

BSNT_02464___    226 AAACTGATGAACGGCAGTTTCGCAATGAGACTTGGGACTGTCCTGAAAAA    275
                     |.|||||||||||||||.|||||.||||..||.||..||||..|...|||
RBAM_014680__    223 AGACTGATGAACGGCAGCTTCGCCATGAAGCTCGGCGCTGTTTTAGCAAA    272

BSNT_02464___    276 TGCTGAGCCGAACAG-----------CTCTGCGACACAATGTGTATTTGT    314
                     |||.|||||||| ||           ||.||||   ||   |.|||||  
RBAM_014680__    273 TGCCGAGCCGAA-AGAAAGCGCTGTCCTGTGCG---CA---TTTATTT--    313

BSNT_02464___    315 CACAAGTTCGGGAAAG-GCCGCCGTTTCTCTGGAAACCGCTCTGAACAGT    363
                       |||..|| .||||| .|||..||..|.||.||||..||..||.||...
RBAM_014680__    314 --CAAAATC-AGAAAGAACCGAAGTGGCGCTCGAAAAGGCGATGGACGCA    360

BSNT_02464___    364 ATTGTCCATTTCAGTGAGGCAGGCAAGCCGATTCAAGAAGGCGGCCCCGT    413
                     ||.|..||||||||.||.||.||.||.||..|||||||.|||||.||.||
RBAM_014680__    361 ATCGCGCATTTCAGCGATGCGGGGAAACCCCTTCAAGACGGCGGACCGGT    410

BSNT_02464___    414 GCATATTTACTTTGAAGACCCGG----TTCATCACAAACAGCCGATTACC    459
                     .|||.|||||.|.||     |||    ||  |.|.|||   |||||.||.
RBAM_014680__    411 CCATTTTTACGTGGA-----CGGCGACTT--TGAAAAA---CCGATAACG    450

BSNT_02464___    460 GATGTAAAAGAGATCGAAATCATTTAA    486
                     |..||.|.|||.||||||.|..|.|||
RBAM_014680__    451 GGCGTCACAGAAATCGAAGTTTTATAA    477


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