Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02493 and RBAM_014890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_02493___ylbJ.1.9828.seq
# -bsequence dna-align/RBAM_014890___ylbJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02493___ylbJ-RBAM_014890___ylbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02493___ylbJ-RBAM_014890___ylbJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02493___ylbJ
# 2: RBAM_014890___ylbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1259
# Identity: 925/1259 (73.5%)
# Similarity: 925/1259 (73.5%)
# Gaps: 64/1259 ( 5.1%)
# Score: 3209.0
#
#
#=======================================
BSNT_02493___ 1 ATGAACTTGTCGAAGATTAATACACTTTTGATTGCCTCGTTTTTTCTTTT 50
|||||.|||||.|||.||.|||||.||||||||.|.|.||||||..||||
RBAM_014890__ 1 ATGAATTTGTCTAAGTTTCATACATTTTTGATTTCATTGTTTTTCATTTT 50
BSNT_02493___ 51 TTTAACAGCGACTGTCATCTCACATCCACAGGCTTCATTCGAAGCCTCTA 100
|||.||.||.||.||.||.|||||.||.|||||.||||||||||||||.|
RBAM_014890__ 51 TTTGACGGCTACGGTTATTTCACACCCTCAGGCCTCATTCGAAGCCTCCA 100
BSNT_02493___ 101 AAACCGGGCTGTCTATGTGGTGGGAGGTTGTGTTTCCGTCATTGCTGCCA 150
|||||||.||.||.||||||||||||||.||.|||||.||||||||.||.
RBAM_014890__ 101 AAACCGGTCTTTCCATGTGGTGGGAGGTAGTTTTTCCTTCATTGCTTCCG 150
BSNT_02493___ 151 TTTTTTATTCTGTCCGAACTCTTAATCGGCTTTGGCATTGTGCGGTTTGT 200
|||||||||||.||.||.||.|||||.||.||.||||||||...||||||
RBAM_014890__ 151 TTTTTTATTCTATCTGAGCTTTTAATAGGATTCGGCATTGTCAAGTTTGT 200
BSNT_02493___ 201 CGGTGTTTTGCTTGAGCCTTTTATGCGGCCGATCTTTC-GCGTGCCGGGT 249
|||..||||.||.||.||.||||||||.||.|| |||| |.||||||||.
RBAM_014890__ 201 CGGCCTTTTACTCGAACCCTTTATGCGTCCCAT-TTTCAGAGTGCCGGGG 249
BSNT_02493___ 250 GTCGGCGGCTTCGTTCTTGCTATGGGAATGGCATCAGGAAACCCAGCGGG 299
||||||||.||.||.||.||||||||.|||||.|||||.||.||.||.||
RBAM_014890__ 250 GTCGGCGGATTTGTACTGGCTATGGGCATGGCTTCAGGCAATCCGGCCGG 299
BSNT_02493___ 300 CGCAAAACTCACTGCCCGTCTGCGGCAGGAAAATCAGATTTCAAGAGTAG 349
|||.||.||.|||||.||.|||||.|||||.||.||.||.||.|||||||
RBAM_014890__ 300 CGCGAAGCTGACTGCACGGCTGCGCCAGGATAAACAAATCTCCAGAGTAG 349
BSNT_02493___ 350 AGGCAGAACGGCTCGCGTCGTTTACCAATTCTTCAAACCCGCTCTTTATT 399
||||.|||||.||||..||.|||||||||||.||.||.|||.|.|||||.
RBAM_014890__ 350 AGGCTGAACGCCTCGTCTCTTTTACCAATTCATCCAATCCGTTATTTATA 399
BSNT_02493___ 400 TTCGGCGCTGTTGCCGTCGGTTTCTTTCAAAACGCGTCACTAGGCATTTT 449
||||..|||||.||.|||||.||.|||||.||||||||.||.||||||.|
RBAM_014890__ 400 TTCGCTGCTGTGGCAGTCGGCTTTTTTCATAACGCGTCTCTCGGCATTCT 449
BSNT_02493___ 450 ATTAGCTTCTGCACACTATTTGGGGAATCTTGCCGTCGGTTTAACAATGC 499
..|.||.||.||.||||||.|.||.||..|.||||||||..|.||.||||
RBAM_014890__ 450 GCTGGCATCGGCTCACTATCTCGGAAACATCGCCGTCGGCCTGACGATGC 499
BSNT_02493___ 500 GTTCCTATGGCCGCAAGGAAG-AGCAGC---AACTCAGAAGAAAGAAAAC 545
||||.||.||.||.||.|||| |||.|| .|| |.|.|.|||| ||
RBAM_014890__ 500 GTTCATACGGACGGAAAGAAGAAGCGGCGTATAC-CGGTAAAAAG---AC 545
BSNT_02493___ 546 GATACCTTTCCCTTCAGTCAAAGATGCTTTACACGCTCTTCATACCGCCA 595
|||..||.|||||||..|.||.||.||.||.|..||.||.||.|..||..
RBAM_014890__ 546 GATCGCTCTCCCTTCTCTGAAGGAAGCATTTCTGGCCCTCCACAAGGCGC 595
BSNT_02493___ 596 GACTTGCAGAAAAACGGCCCTTGGGTAAAATTTTAGGCGACGCCGTGACG 645
|.|||.|.|||||.|||||..|.||.||||||||.|||||||||||.||.
RBAM_014890__ 596 GGCTTTCGGAAAAGCGGCCGCTCGGAAAAATTTTGGGCGACGCCGTCACC 645
BSNT_02493___ 646 TCTTCTGTTCAAACGCTT-CTTATGGTAGGCGGCTTTATTATTTTATTTT 694
||||||||.||||| ||| ||.|||||.|||||.||||||||.||.||||
RBAM_014890__ 646 TCTTCTGTACAAAC-CTTGCTGATGGTGGGCGGTTTTATTATATTGTTTT 694
BSNT_02493___ 695 CTGTCTTCAATCGACTGTTGTCAGTGGTCCAGCTGACTGATGTTTTGTCT 744
|.||.||||..||..|.||.|||.|.||.||..|.|..|||||..|.|||
RBAM_014890__ 695 CGGTTTTCAGCCGGTTATTATCAATCGTACAAGTCATGGATGTGCTTTCT 744
BSNT_02493___ 745 GTTTTCACAAAAGGAGCACTGACTT----TGTTTCAGCTTCCGACTCAAT 790
||.||.||||| .||.||| ||| |.|||||.||||||.| .|||
RBAM_014890__ 745 GTATTTACAAA---CGCGCTG-CTTTCGCTTTTTCATCTTCCGGC-AAAT 789
BSNT_02493___ 791 -TGGACATTCCGCTTTTATCA--GGGATGTTTGAAATTACATTAGGCAGC 837
||||||| |.||.|||||| ||.|||||||||||||||.|.||.|||
RBAM_014890__ 790 CTGGACAT--CCCTCTTATCAGCGGAATGTTTGAAATTACACTTGGGAGC 837
BSNT_02493___ 838 AAGCTTGTCAGCGAGACAGATGTTTCTCTT-CTGCAAAAAGCCATTATCG 886
|||||.|||||.||..|.||||...| ||| ||||..||||||||.||.|
RBAM_014890__ 838 AAGCTGGTCAGTGAAGCTGATGCCGC-CTTGCTGCCGAAAGCCATGATTG 886
BSNT_02493___ 887 TCAGCTTTATTCTCGGGTTTAGCGGCTTTTCCGTACAAGCTCAGGTGGCA 936
|.||.||||||||||||||.||||||.||||||||||.||.|||||.||.
RBAM_014890__ 887 TGAGTTTTATTCTCGGGTTCAGCGGCCTTTCCGTACAGGCCCAGGTAGCC 936
BSNT_02493___ 937 GGTATTTTATCGGAAACCGACATTCGATTTAAACCATTCTTTATC-GCAC 985
||.||||||||||||||.||.||.||.||||||||.|| |||..| ||.|
RBAM_014890__ 937 GGCATTTTATCGGAAACAGATATCCGCTTTAAACCGTT-TTTCGCGGCGC 985
BSNT_02493___ 986 GTTTGCTGCAGGGCGTTTATGCCGCTGTCTTCGTCATGCTTTTA---TGG 1032
||.|.||.||||||.||||||||||..||| |.||.||.||| |||
RBAM_014890__ 986 GTATCCTTCAGGGCATTTATGCCGCACTCT---TTATTCTCTTACTGTGG 1032
BSNT_02493___ 1033 AAACCTCTTTACACGGCATGGCATGATCCATATCAGTATGTATTTAAATC 1082
||.||.||||||...||||.|.|.||.||.||.||||..||||| ..||
RBAM_014890__ 1033 AAGCCGCTTTACCTTGCATTGGACGAACCTTACCAGTCCGTATT--CCTC 1080
BSNT_02493___ 1083 TCTT------AACA-GCAGTGACATGCCAACTGCCTTTATAAACGGCTGG 1125
.||| |.|| |.||.|..|| |..||||| .|.|.|||||||
RBAM_014890__ 1081 CCTTTCCGCGATCAGGAAGCGGTAT--CTGCTGCC---GTCAGCGGCTGG 1125
BSNT_02493___ 1126 AATCTGCTTGTGCAGATCGGACCTGCTGTCACACTATG------CGCGCT 1169
|||...|||||..|.|.|||.||.||..||||.| || |.|||.
RBAM_014890__ 1126 AATACACTTGTTGAAACCGGGCCCGCCATCACGC--TGACAGCTCTCGCC 1173
BSNT_02493___ 1170 GTTTACGTACATTATCATTTTTTCTTACAGACTGACA-AACGGAACAAAA 1218
||.|||| ||| |.||||.||.||||||.|||.|| .|||| ||||||
RBAM_014890__ 1174 GTATACG--CAT--TGATTTATTGTTACAGGCTGTCAGCACGG-ACAAAA 1218
BSNT_02493___ 1219 AAAGGATGA 1227
|||||||||
RBAM_014890__ 1219 AAAGGATGA 1227
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