Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02507 and RBAM_015020

See Amino acid alignment / Visit BSNT_02507 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:16
# Commandline: needle
#    -asequence dna-align/BSNT_02507___pbpB.1.9828.seq
#    -bsequence dna-align/RBAM_015020___pbpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02507___pbpB-RBAM_015020___pbpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02507___pbpB-RBAM_015020___pbpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02507___pbpB
# 2: RBAM_015020___pbpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2186
# Identity:    1666/2186 (76.2%)
# Similarity:  1666/2186 (76.2%)
# Gaps:          76/2186 ( 3.5%)
# Score: 6264.0
# 
#
#=======================================

BSNT_02507___      1 ATGATTCAAATGCCAAAAAAGAATAAATTTATGAATAGAGGAGCAGCGAT     50
                              |||||.|||||.|||||.||||||||.||||||||||||||
RBAM_015020__      1 ---------ATGCCGAAAAAAAATAAGTTTATGAACAGAGGAGCAGCGAT     41

BSNT_02507___     51 TCTAAGTATTTGTTTCGCTCTCTTTTTCTTTGTCATCCTGGGGAGAATGG    100
                     .||.||||||||||||||||||||||||||||||||.||.||||||||||
RBAM_015020__     42 ACTCAGTATTTGTTTCGCTCTCTTTTTCTTTGTCATTCTCGGGAGAATGG     91

BSNT_02507___    101 CATATATTCAAATAACCGGAAAAGCGAACGGCGAAGTGCTTGCGACAAAA    150
                     |.||.||||||.|||||||.|||||.|||||.|.||..|||||.||||||
RBAM_015020__     92 CGTACATTCAATTAACCGGTAAAGCAAACGGTGTAGAACTTGCAACAAAA    141

BSNT_02507___    151 GCGACAGAGCAGCATGAAAAGAAACGGACCATCGAAGCGAGCCGCGGCTC    200
                     |||||.||||||||.|||||.||.|||||.||.|||||||||||||||||
RBAM_015020__    142 GCGACCGAGCAGCACGAAAAAAAGCGGACGATAGAAGCGAGCCGCGGCTC    191

BSNT_02507___    201 GATTTTAGACCGAAAAGGAAAAGTCATTGCAGAGGACACAGCGACGTATA    250
                     .|||.|.|||||.||.||.|||||..|||||||||||||.|||||.||||
RBAM_015020__    192 TATTCTTGACCGGAACGGCAAAGTGCTTGCAGAGGACACGGCGACATATA    241

BSNT_02507___    251 AACTGATTGCGATTCTCGATAAAAAAATGACCACTGATGTCAAGCATCCT    300
                     ||||.|||||..|.||.||||||||||||||.|.||||...|||||||||
RBAM_015020__    242 AACTCATTGCCGTGCTTGATAAAAAAATGACGAGTGATCCGAAGCATCCT    291

BSNT_02507___    301 CAGCATGTTGTAAACAAAGAAAAAACGGCGGAAGCATTGTCTAAAGTGAT    350
                     ||||||||...|.|||||||.||||||||||||..|.||.|.|..||.||
RBAM_015020__    292 CAGCATGTCAAAGACAAAGAGAAAACGGCGGAAAAACTGGCGACCGTTAT    341

BSNT_02507___    351 -AAACTTG-GACAAGGCCGACATCCTTGATATCTTAAATAAAGAT---GC    395
                      ||.|||| .|.|||  |||.||.||.||.||||||||.|..|||   ||
RBAM_015020__    342 CAATCTTGATAAAAG--CGAGATTCTGGACATCTTAAACAGGGATGGCGC    389

BSNT_02507___    396 AAAACAAGTCGAGTTTGGCTCAGCTGGCCGGGATATTACGTATTCACAAA    445
                     .||.||.||.||.||.||.|||||.|||||.|||||..|.|||.|..|||
RBAM_015020__    390 GAAGCAGGTGGAATTCGGTTCAGCCGGCCGCGATATCTCTTATGCGAAAA    439

BSNT_02507___    446 AGCAAAAAATTGAAAAAATGAAACTCCCGGGCATTTCATTTTTGCGGGAT    495
                     |.|||||.||.|||||||||||.||.|||||.|||||.||.||..|.|||
RBAM_015020__    440 AACAAAAGATCGAAAAAATGAATCTTCCGGGTATTTCTTTCTTAAGAGAT    489

BSNT_02507___    496 ACAAAACGCTACTATCCAAATG--GTATTTTCGCATCCAATTTAATCGGC    543
                     ||.||.|||||||||||.||.|  |||||||.|  ||.|||.|..|||||
RBAM_015020__    490 ACGAAGCGCTACTATCCGAACGGTGTATTTTTG--TCAAATGTTCTCGGC    537

BSNT_02507___    544 TATGCCGAGGTTGATCAAGACACAAATGAAATTTCCGGCGCGATGGGGTT    593
                     ||||||||.||..||.||.|.|||||.||.||....|||.|..|.|||.|
RBAM_015020__    538 TATGCCGATGTGAATGAAAAAACAAACGAGATACAAGGCTCTTTAGGGCT    587

BSNT_02507___    594 AGAAAAAGTGCTGGATAAGTATTTGAAGGAGCGCGACGGATATGTGACAT    643
                     .||||||.|.|||.|.||.|||.|||.|||.||||||||||..||.||.|
RBAM_015020__    588 TGAAAAAATACTGAACAACTATCTGACGGAACGCGACGGATCCGTCACTT    637

BSNT_02507___    644 ATGAAAGCGACAAATCCGGCTGGGAGCTCCCGAACAGCAAAAATAAAATT    693
                     |.|||||.||.||||||||||||.|.||.||||||||||||.|.|||||.
RBAM_015020__    638 ACGAAAGTGATAAATCCGGCTGGAAACTTCCGAACAGCAAAGAAAAAATC    687

BSNT_02507___    694 ACAGCGCCAAAAAATGGTGACAATGTATATTTAACCATTGACCAGAATAT    743
                     ||.||.||.|||||.||||||||||||||||||||||||||.|||||.||
RBAM_015020__    688 ACCGCACCTAAAAACGGTGACAATGTATATTTAACCATTGATCAGAAAAT    737

BSNT_02507___    744 TCAAACCTTTTTGGAAGACAGTATGACAAAAGTGGCGCAAAAGTATAATC    793
                     ||||||||||||.||||||||.|||||.|||||.|||.||||.|||||.|
RBAM_015020__    738 TCAAACCTTTTTAGAAGACAGCATGACGAAAGTAGCGGAAAAATATAAAC    787

BSNT_02507___    794 CGAAAAAAATCATGGCCGCAGTCGTTGATCCGAAAACGGGCAAAGTCCTT    843
                     ||||||||||.|||||.||.|||||.||.||||||||.||||||||.|||
RBAM_015020__    788 CGAAAAAAATTATGGCGGCTGTCGTAGAACCGAAAACAGGCAAAGTGCTT    837

BSNT_02507___    844 GCCATGGGACAGCGCCCAAGCTTTGATCCGAACAAGCGCGATGTGACAAA    893
                     ||.|||||.||.||.||.||.|||||.|||||.|...|..|.||.||.||
RBAM_015020__    838 GCGATGGGGCAACGTCCGAGTTTTGACCCGAATATCAGAAACGTCACCAA    887

BSNT_02507___    894 CTACTATAATGATTTGATTTCATATGCGTATGAGCCCGGATCAACGATGA    943
                     .||.||.||.||.||..|.||.||.||.|||||.||.||.||||||||||
RBAM_015020__    888 TTATTACAACGACTTAGTGTCGTACGCATATGAACCGGGTTCAACGATGA    937

BSNT_02507___    944 AGATCTTTACACTCGCTGCTGCGATGCAGGAAAACGTGTTTAATGCGAAC    993
                     ||||||||||.||.|||||.|||||.||||||||.||||||...||.|||
RBAM_015020__    938 AGATCTTTACGCTTGCTGCGGCGATTCAGGAAAATGTGTTTTCCGCAAAC    987

BSNT_02507___    994 GAAAAATATAAATCAGGGACATTTGAAGTTGGCGGAGCACCTGTCAGGGA   1043
                     ||.||||||||||||||.||||.|.||||.||.||.|.||||||      
RBAM_015020__    988 GAGAAATATAAATCAGGAACATATAAAGTGGGAGGCGGACCTGT------   1031

BSNT_02507___   1044 CCATAATAGA--GGAA--------TAGGCTGGGGACCGACAACCTATCAT   1083
                        ||| |||  ||||        ..||||||||...|||||.||..|||
RBAM_015020__   1032 ---TAA-AGATTGGAACGATGGCGCCGGCTGGGGCATGACAAGCTTCCAT   1077

BSNT_02507___   1084 GACGGCGTTCTAAGATCGTCGAATGTCGCTTTTGCGAAACTGGCGAAAGA   1133
                     ||||||.||.|.||.||.||.|||||.||||||||.||||||||.||.||
RBAM_015020__   1078 GACGGCCTTATGAGGTCATCCAATGTTGCTTTTGCCAAACTGGCCAACGA   1127

BSNT_02507___   1134 AAAGCTGGGATATGACCGCCTCAATCAATATTTGCACAAATTCAATTTTT   1183
                     |||.|||||.|.||||||..|.|||.|.||..|||||||||||....|.|
RBAM_015020__   1128 AAAACTGGGGTTTGACCGGTTTAATGAGTACCTGCACAAATTCGGGCTCT   1177

BSNT_02507___   1184 ACCAGAAAACAGGTATTGATTTGCCTGGAGAAGTCTCCAGCAAAATCAAC   1233
                     |.||.||||||||..|||||.||||.||.|||||.||.||.|||||.|||
RBAM_015020__   1178 ATCAAAAAACAGGGGTTGATCTGCCCGGTGAAGTATCAAGTAAAATTAAC   1227

BSNT_02507___   1234 TTTAAATATGAATTTGATAAGGCGTCAACTGCATATGGCCAAGCGTCTGC   1283
                     |..||||||||.|||||.||.|||||.||.||.||.||||||||.||.||
RBAM_015020__   1228 TACAAATATGATTTTGACAAAGCGTCTACGGCTTACGGCCAAGCATCGGC   1277

BSNT_02507___   1284 GGTCACACCAATTCAGCAGATTCAGGCCGCAACGGCAATTGCAAATGACG   1333
                     |.|.||.||.||.||||||.|||||||||..|||||.|||||.|||.|||
RBAM_015020__   1278 GATAACGCCGATCCAGCAGCTTCAGGCCGTCACGGCGATTGCCAATAACG   1327

BSNT_02507___   1334 GCAAAATGATGAAACCTTATGTGATTGACCATATCGTTGATCCCGATAAA   1383
                     |||||||||||||||||||.||.|||||.|||||.||.||||||||| |.
RBAM_015020__   1328 GCAAAATGATGAAACCTTACGTCATTGATCATATTGTCGATCCCGAT-AC   1376

BSNT_02507___   1384 GATAAAACTATTTA-----TCAAAATAAGCCGGAATCAGCCGGAACCCCA   1428
                     ||.||||.|..|.|     .|||||    ||.||...||..||.||.||.
RBAM_015020__   1377 GAAAAAAGTCGTCAAGCAGACAAAA----CCAGAGCAAGTAGGCACGCCG   1422

BSNT_02507___   1429 ATTTCTGCAAGC----ACAGCGAAAAAGGTGCGGGATATATTGGGAGAAG   1474
                     |||||    |||    ||.||||||||.||.|||.|..|..|.|||||||
RBAM_015020__   1423 ATTTC----AGCCGATACGGCGAAAAAAGTCCGGAACCTGCTCGGAGAAG   1468

BSNT_02507___   1475 TTGTTACGTCGAAAATCGGAACAGGGCAAGCATATAAAATCGAAGGTTTT   1524
                     |.||.|||||..|.||||||||.||..||.|.||||||||.|||||.|||
RBAM_015020__   1469 TCGTGACGTCAGACATCGGAACGGGAAAACCTTATAAAATTGAAGGATTT   1518

BSNT_02507___   1525 GATGTTGCCGGGAAAACAGGTACTGCGCAAATAGCCGGTAAAGGCGGATA   1574
                     ||.||.||.||.|||||.||.||.||||||||.|||||.|..||||||||
RBAM_015020__   1519 GACGTCGCGGGTAAAACGGGAACCGCGCAAATTGCCGGGACGGGCGGATA   1568

BSNT_02507___   1575 TTT-AGACGGCACAGA-TAACTATATCTTTTCTTTTATGGGTATGGCGCC   1622
                     ||| ||| ||.|| || .||||||.|.|||||.||.|||||.||||||||
RBAM_015020__   1569 TTTAAGA-GGAAC-GAGCAACTATGTGTTTTCATTCATGGGCATGGCGCC   1616

BSNT_02507___   1623 AAAAGATGATCCTGAGCTTTTAATTTATGTTGCTGTACAGCAGCCGCAAC   1672
                     .|||.||||||||.||||..|.||.|||||.||.||.||||||||||||.
RBAM_015020__   1617 GAAAAATGATCCTAAGCTCGTCATCTATGTAGCCGTGCAGCAGCCGCAAT   1666

BSNT_02507___   1673 TAAAAGCAGGACAAAGCAGTTCAGATCCAGTATCAGAAATCTTCAATCCA   1722
                     |||||||.||.||||||||.||.|||||.||..|.||||||||.||.||.
RBAM_015020__   1667 TAAAAGCGGGGCAAAGCAGCTCTGATCCTGTCGCGGAAATCTTTAACCCG   1716

BSNT_02507___   1723 ACAATGAAAAATAGCCTGCACTACCTAAACATCGAACCAACTGAAAAATC   1772
                     ||.||||||||.|||||.||||||.|.||.||||||||.||.||||||.|
RBAM_015020__   1717 ACGATGAAAAACAGCCTCCACTACATGAATATCGAACCGACGGAAAAAAC   1766

BSNT_02507___   1773 TGACTCAGATAAGGAAGAAAC-AAAAGCGCAGACAATGCCTGATTTAACA   1821
                     .||.||.|.|.|||||||||| |||||| ||.|..||||||||..|.|||
RBAM_015020__   1767 AGATTCCGGTCAGGAAGAAACGAAAAGC-CAAAAGATGCCTGACCTGACA   1815

BSNT_02507___   1822 GATCAAACGGT----AGCTGCTGCTCAAAAGAAAGCAAAAGAGGAGAATC   1867
                     |||.|.|||||    |||    |||.|.|||.||||.|||.|.||..|||
RBAM_015020__   1816 GATAAGACGGTCAAGAGC----GCTGAGAAGGAAGCGAAAAATGAACATC   1861

BSNT_02507___   1868 TCACACCAATTGTCATCGGCAGTGATGTCGCTGTAAAAGAACAGTATCCG   1917
                     |||||||.||||||||||||||.|||||.||.||||||||.|||||||||
RBAM_015020__   1862 TCACACCGATTGTCATCGGCAGCGATGTTGCCGTAAAAGAGCAGTATCCG   1911

BSNT_02507___   1918 AAAG-CGGATGAGGAAGTTCTCACCAATCAAAAGGTCTTCCTGAAAACGG   1966
                     |.|| |||| ||.||.||..||||||||||.||..|||||.|.|||||.|
RBAM_015020__   1912 ACAGCCGGA-GAAGATGTGATCACCAATCAGAAAATCTTCTTAAAAACAG   1960

BSNT_02507___   1967 GCGGCAAAATCAAAATGCCTGATATGACAGGCTGGTCGAGAAGAGAGGTT   2016
                     .|||.||.||.|..|||||.||||||.|.||.|||||||||.|.||.||.
RBAM_015020__   1961 ACGGAAAGATGACGATGCCGGATATGTCCGGATGGTCGAGACGGGAAGTG   2010

BSNT_02507___   2017 CTGCAGTACGGCGAGCTCGCGGGAATTCATATTGAAGTAAGCGGACAAGG   2066
                     ||.||.|.|.||.|..|..|.||.|||||.||.||.||.|||||..||||
RBAM_015020__   2011 CTTCAATTCAGCAAAGTATCAGGCATTCACATCGATGTGAGCGGTGAAGG   2060

BSNT_02507___   2067 CTACGCTGTC-AGCCAAAGTGTTAAGAAAGACAAAGAAATCAAAGACAAA   2115
                     .|||||| || |||||||||||.||.||||.|||||||.|.|||||.||.
RBAM_015020__   2061 TTACGCT-TCAAGCCAAAGTGTGAAAAAAGGCAAAGAACTGAAAGAAAAT   2109

BSNT_02507___   2116 ACCGTAATCAAGGTTAAGTTTAAAAATCCTGATTAA   2151
                     |||||.||||||||.||.||||||||||||||||||
RBAM_015020__   2110 ACCGTGATCAAGGTGAAATTTAAAAATCCTGATTAA   2145


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