Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02513 and RBAM_015060

See Amino acid alignment / Visit BSNT_02513 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:17
# Commandline: needle
#    -asequence dna-align/BSNT_02513___murD.1.9828.seq
#    -bsequence dna-align/RBAM_015060___murD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02513___murD-RBAM_015060___murD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02513___murD-RBAM_015060___murD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02513___murD
# 2: RBAM_015060___murD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1380
# Identity:    1093/1380 (79.2%)
# Similarity:  1093/1380 (79.2%)
# Gaps:          48/1380 ( 3.5%)
# Score: 4333.0
# 
#
#=======================================

BSNT_02513___      1 GTGGAAAATGATCAATTTTTACAGAAACAGCATTTTTTAATCCTTGGGCT     50
                     ||||||||.||.|..|||||.||.|||||..|.|||.|..||||.||.||
RBAM_015060__      1 GTGGAAAACGAACTTTTTTTGCAAAAACAAAACTTTCTGGTCCTCGGACT     50

BSNT_02513___     51 TGCGAAAAGCGGATATGCGGCGGCCTCCATTCTTCATGAAAAAGGCATTT    100
                     .||||||||||||||||||||.||.||.|||||||||||||||||||||.
RBAM_015060__     51 GGCGAAAAGCGGATATGCGGCTGCGTCGATTCTTCATGAAAAAGGCATTA    100

BSNT_02513___    101 ATGTTGCAGTCAATGA-CCAAAAGCCTTTTGAAGAAAATGAACCGGCACA    149
                     |.||.|..||.||||| |.||||||| ||||||||.||.|||||.||.||
RBAM_015060__    101 ACGTCGTCGTGAATGATCAAAAAGCC-TTTGAAGAGAACGAACCTGCCCA    149

BSNT_02513___    150 AAAGCTTTCTGAAAAAGGAATCGAAGTTGTTTGCGGAGAGCATCCAGTTT    199
                     ||.||||.|.||||.||||||.|||||..|.|||||.||||||||....|
RBAM_015060__    150 AAGGCTTGCAGAAAGAGGAATTGAAGTCATCTGCGGTGAGCATCCGACGT    199

BSNT_02513___    200 CTCTGTTCGATCAGCATCAAATCACGATTCTGATCAAAAACCCGGGAATT    249
                     |.||.||.|||||||||||.||.||.||||||||||||||.||.|||||.
RBAM_015060__    200 CACTTTTTGATCAGCATCACATTACCATTCTGATCAAAAATCCCGGAATC    249

BSNT_02513___    250 CCTTATGAAAATATTATGGTTCAGGAAGCGGAGAAAAGAGGTATTCCGGT    299
                     ||.|||||||||||.|||||..||||||||.|.|.||||||.||.|||||
RBAM_015060__    250 CCGTATGAAAATATCATGGTGGAGGAAGCGCAAAGAAGAGGCATCCCGGT    299

BSNT_02513___    300 TTGGACGGAAATTGAGCTCGCTTACTACCTGACCAGCGCCAAGTTTATCG    349
                     .|||||||||||.|||||.||.||.||..|.||||..||.||.||.||||
RBAM_015060__    300 CTGGACGGAAATCGAGCTTGCGTATTATATCACCAATGCAAAATTCATCG    349

BSNT_02513___    350 GGATTACCGGATCGAACGGTAAAACGACCACGACAACGCTAATTTACGAA    399
                     |.|||||.||.||.|||||.|||||.||.|||||.||.||||||||.|||
RBAM_015060__    350 GCATTACAGGTTCAAACGGGAAAACAACAACGACGACCCTAATTTATGAA    399

BSNT_02513___    400 ATGCTCAAAGCTGACTCGCAAAAAG-CACTGATTGCCGGAAACATCGGCA    448
                     |||||.||||||||.||| |.|||| |.|||||.||.||.||.|||||||
RBAM_015060__    400 ATGCTGAAAGCTGATTCG-ATAAAGACGCTGATCGCAGGGAATATCGGCA    448

BSNT_02513___    449 CAGTCGCAAGTGAGGTTGCCTATCATGCTGATGGAGATGAATGGATCGTT    498
                     |.|||||.|||||.||.||.|||||||||||.||.||||||||||||||.
RBAM_015060__    449 CTGTCGCCAGTGAAGTGGCTTATCATGCTGACGGTGATGAATGGATCGTC    498

BSNT_02513___    499 ACCGAACTGTCTTCGTTTCAGCTGATGGGAACACACGCTTTCAGACCGGA    548
                     ||.||.||.||||||||.|||||||||||.||.||.||.||||||||.||
RBAM_015060__    499 ACAGAGCTTTCTTCGTTCCAGCTGATGGGGACTCATGCGTTCAGACCTGA    548

BSNT_02513___    549 AATCAGCCTGATTTTAAATGTATTTGACGCCCATCTGGATTATCACCATA    598
                     ||||.||||||||||||||||.||.|||||.|||.|||||||.||.||.|
RBAM_015060__    549 AATCGGCCTGATTTTAAATGTGTTCGACGCTCATTTGGATTACCATCACA    598

BSNT_02513___    599 CGCGCGAAAACTATGAAAAAGCGAAACAGAAAGTGTACCTTCATCAGACT    648
                     ..||.|||||.|||||||||||.||.|||||.|||||.||||||||    
RBAM_015060__    599 GCCGTGAAAATTATGAAAAAGCCAAGCAGAACGTGTATCTTCATCA----    644

BSNT_02513___    649 GCTTCA----GATAAAGCCATTGTCAACCAGGATGATGAAACCGTCGTGC    694
                     ||||.|    ||||..|||||.||.||.|||...||||||||.|||||||
RBAM_015060__    645 GCTTGAGAGTGATACGGCCATCGTGAATCAGAGCGATGAAACAGTCGTGC    694

BSNT_02513___    695 GTCTTGCTGAAGCCGGAAAAGCCGAAATCGTCCCATTTTCAG-TCAGCAA    743
                     |.|||||.|||..|||||||||||..|.|||.||.||||||| |||.|| 
RBAM_015060__    695 GGCTTGCCGAAAGCGGAAAAGCCGGCACCGTTCCGTTTTCAGTTCACCA-    743

BSNT_02513___    744 AACGCTTGAACAG------GGCGCATATGTAAAAGACAGTATGATTATGT    787
                           .||||.|      |||||||...|.||||||.|.|||.|.||||
RBAM_015060__    744 ------GGAACTGTCAAGCGGCGCATTCATTAAAGACGGAATGCTGATGT    787

BSNT_02513___    788 TTAACGGC---GAAGCCATTCTTCCTCTGGAAGAGGTTGTGCTGCCCGGT    834
                     |   ||||   |||||.|||||.|||.|.||.||..|.||.|||||.||.
RBAM_015060__    788 T---CGGCGATGAAGCGATTCTGCCTGTTGATGACATCGTACTGCCGGGC    834

BSNT_02513___    835 GCTCATAACCTGGAGAACATTTTAGCAGCTATTGCAGTTGTGAAAACGGC    884
                     ||.||.||..|.||.||.||||||||.|||.|.||.|..|..||||||||
RBAM_015060__    835 GCGCACAATTTAGAAAATATTTTAGCCGCTGTAGCCGCGGCAAAAACGGC    884

BSNT_02513___    885 AGGAGCATCCAATGAGGCGGTTAAAAAGGTGCTGACAAGCTTTACTGGTG    934
                     .||.||.||.|||.|.|||.||.|.||||||||||||||||||||.||||
RBAM_015060__    885 GGGCGCGTCTAATAAAGCGATTCAGAAGGTGCTGACAAGCTTTACCGGTG    934

BSNT_02513___    935 TGAAGCACCGCCTCCAATATGTCACAACTG------TGAATGGCCGCAAA    978
                     |.||.|||||.||.||.|||||   |||||      .||||   ||.|||
RBAM_015060__    935 TCAAACACCGTCTGCAGTATGT---AACTGCGATCCAGAAT---CGTAAA    978

BSNT_02513___    979 TTTTATAACGACAGTAAAGCAACAAACATTCTGGCGACAAGCAAGGCGCT   1028
                     ||||||||.|||||.|||||.||.||.||||||||.||||||||.|||||
RBAM_015060__    979 TTTTATAATGACAGCAAAGCGACGAATATTCTGGCCACAAGCAAAGCGCT   1028

BSNT_02513___   1029 TTCAGCTTTTGATAAG--CCGGTCATTCTGCTTGCGGGCGGACTGGATCG   1076
                     .||.||.||  ..|||  |||||.|||||||||||.|||||||||||.||
RBAM_015060__   1029 CTCGGCGTT--CAAAGCACCGGTTATTCTGCTTGCAGGCGGACTGGACCG   1076

BSNT_02513___   1077 CGGAAATGGTTTTGATGACTTGAAACCTTATATGAAGCATGTCAAAGCAG   1126
                     |||.||.||||||||.|||.|||||||.||||||.|..||||||||||.|
RBAM_015060__   1077 CGGCAACGGTTTTGACGACCTGAAACCGTATATGGACAATGTCAAAGCGG   1126

BSNT_02513___   1127 TGCTTACATTTGGCCAGACGGCGCCAAAACTCGAGAAACTCGGCAATGAA   1176
                     |.||.||.||.||.|||||.|||||.||..|.||.|||||.||||||||.
RBAM_015060__   1127 TCCTGACGTTCGGACAGACAGCGCCGAAGATAGAAAAACTGGGCAATGAG   1176

BSNT_02513___   1177 CTGGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATC   1226
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_015060__   1177 CTGGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATC   1226

BSNT_02513___   1227 TGCGGCGTTTGCGCTCTCAAATGAAGGAGATGTCATCCTGCTGTCACCCG   1276
                     ||||||||||||||||||||||||||||||.||||||||..|||||||||
RBAM_015060__   1227 TGCGGCGTTTGCGCTCTCAAATGAAGGAGACGTCATCCTCTTGTCACCCG   1276

BSNT_02513___   1277 CGTGTGCGAGCTGGGATCAATTCAAAACATTTGAAGAACGCGGTGACATG   1326
                     |||||||.|||||||||||.||||||||||||||||||||||||||||||
RBAM_015060__   1277 CGTGTGCAAGCTGGGATCAGTTCAAAACATTTGAAGAACGCGGTGACATG   1326

BSNT_02513___   1327 TTTATAGATGCCGTGCATATGCTTAAGTAA   1356
                     ||||||||||||||||||||||||||||||
RBAM_015060__   1327 TTTATAGATGCCGTGCATATGCTTAAGTAA   1356


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