Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02530 and RBAM_015140

See Amino acid alignment / Visit BSNT_02530 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_02530___spoIIGA.1.9828.seq
#    -bsequence dna-align/RBAM_015140___spoIIGA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02530___spoIIGA-RBAM_015140___spoIIGA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02530___spoIIGA-RBAM_015140___spoIIGA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02530___spoIIGA
# 2: RBAM_015140___spoIIGA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity:     707/940 (75.2%)
# Similarity:   707/940 (75.2%)
# Gaps:          20/940 ( 2.1%)
# Score: 2549.5
# 
#
#=======================================

BSNT_02530___      1 GTGAAAATCTATTTAGATGTCATTTGGCTGTTAAACTTTTGTTTTGATGC     50
                     ||||||||||||.|.|||||||||||||||||.|||||||||||||||.|
RBAM_015140__      1 GTGAAAATCTATCTGGATGTCATTTGGCTGTTGAACTTTTGTTTTGATTC     50

BSNT_02530___     51 ACTTTTGCTTTTGCTCACGGCATTTATTTTAAAACGGCATGTAAAAAAAA    100
                     .|||||||||||..|.||.||.||||||||||||||.||.||.|||||||
RBAM_015140__     51 TCTTTTGCTTTTATTGACCGCCTTTATTTTAAAACGCCAGGTGAAAAAAA    100

BSNT_02530___    101 GAAGACTGGTAGGCGGAGCGTTCATCGGTTCCAG-TATTGTCCTTTTGAT    149
                     |||||.|||..|.|||.|..||||||||.| ||| .|||||.|||.||||
RBAM_015140__    101 GAAGAGTGGCCGCCGGCGGTTTCATCGGGT-CAGCCATTGTGCTTCTGAT    149

BSNT_02530___    150 GTTTACTCCTTTTTCGCCGATTGTTGAACATCCGGCTGGGAAGCTAGCTT    199
                     ||||||.|||.||||.||..||||.||.||||||||.||.||..|.||.|
RBAM_015140__    150 GTTTACGCCTGTTTCTCCCTTTGTGGAGCATCCGGCGGGAAAAATGGCGT    199

BSNT_02530___    200 TTTCAGTTGTGATTGTGGTGGTGACATTTGGCTTTAAAAGATTTCGGTTT    249
                     |||||||.||.||.|||.|.|.|.|.||||||||||||.|.||.||.|..
RBAM_015140__    200 TTTCAGTAGTCATCGTGCTTGCGGCTTTTGGCTTTAAACGGTTCCGATAC    249

BSNT_02530___    250 TTCTTTCAAAATTTGTTTTCCTTTTATTTTGCCACTTTTTTAATGGGGGG    299
                     ||.||||||||||||||..||||||||||.||.||||||.|..|.||.||
RBAM_015140__    250 TTTTTTCAAAATTTGTTCGCCTTTTATTTCGCGACTTTTCTCGTCGGCGG    299

BSNT_02530___    300 AGGAATTATCGGAGCCCATTCTTTGCTGCAGTCAAATTCTATTGTTCAAA    349
                     .|||||.|||||.|..|||||..||||||||.||.|.||.|||||.||..
RBAM_015140__    300 GGGAATGATCGGCGTACATTCCCTGCTGCAGACAGAATCAATTGTGCAGC    349

BSNT_02530___    350 ACGGTGTCATGATTACCAATCAAACAGGGTTTGGAGACCCGATCAGCTGG    399
                     |.||.||.|||.|.||.|..||.||.||.||.||.|||||||||||||||
RBAM_015140__    350 AAGGCGTAATGGTCACAAGCCAGACCGGATTCGGCGACCCGATCAGCTGG    399

BSNT_02530___    400 TTGTTTATTGTTGCTGGCTTTCCAGCATTATGGTTTTTTTCTAAAAGAAG    449
                     .|||||.|.|||...||.|||||.||..|||||||||||||.||||..||
RBAM_015140__    400 ATGTTTGTAGTTATCGGATTTCCGGCCATATGGTTTTTTTCGAAAAAGAG    449

BSNT_02530___    450 AATTGAAGATATTGAAACAAAAAACATTCAATATGAGGAACGAGTCAGCG    499
                     |||||||||.||.||.||.||...||||||.||.||.||||..||||..|
RBAM_015140__    450 AATTGAAGACATCGAGACGAAGTCCATTCAGTACGATGAACTTGTCATGG    499

BSNT_02530___    500 TGCAGGCAGATTTGGGCAGCCAAACACTTCATGTCAGAGGCCTGATTGAT    549
                     |||||||.||.||..||.|.||.|||.|.|..|..|.|||..||.|.|||
RBAM_015140__    500 TGCAGGCGGAATTCAGCGGACAGACAATCCGCGCGAAAGGATTGGTGGAT    549

BSNT_02530___    550 TCCGGTAATCAGCTGTACGATCCTCTTACAAAAACACCGGTAATGATCAT    599
                     |||||.|||||||||||.|||||.||.||.|||||.|||||.||||||.|
RBAM_015140__    550 TCCGGGAATCAGCTGTATGATCCGCTGACGAAAACGCCGGTCATGATCCT    599

BSNT_02530___    600 TTACATTGATAAACTGGAGCCGATTTTC--GGAACAGCCGAAACGATGA-    646
                     ||.||||||.|||.|.|..||||||.||  .|||.||  ||||||  || 
RBAM_015140__    600 TTGCATTGACAAATTCGCTCCGATTCTCAGCGAAAAG--GAAACG--GAC    645

BSNT_02530___    647 -TCATTCGAAAC--ACAGACCCATTGGAAGCCATCGAACAGCTCGATGAT    693
                      ||| ||.||.|  .|||.||..|| ||||..||.||.|||||.||||||
RBAM_015140__    646 CTCA-TCAAATCCGCCAGTCCGCTT-GAAGTGATAGAGCAGCTTGATGAT    693

BSNT_02530___    694 TCCTTTCGCTTTTTAGATAAAATGAGGTTGATTCCATACAGGGGAGTTGG    743
                     ||.||.|||..|...|||||..|||||.||||||||||||||||.||.||
RBAM_015140__    694 TCGTTCCGCCATGCGGATAAGCTGAGGCTGATTCCATACAGGGGCGTCGG    743

BSNT_02530___    744 TCAGCAAAATCAATTTTTATTATGCGTTAAA-CCGGATCACGTAACGATT    792
                     .|||.|.||||||||||||.|.|| .||||| ||||||.||||.||||||
RBAM_015140__    744 CCAGGACAATCAATTTTTACTCTG-TTTAAAGCCGGATTACGTCACGATT    792

BSNT_02530___    793 ATGACAAAAGAAGAAATGATCTCTGCAGATAAATGTTTAATCGGCATCAG    842
                     .|.||||||||.|||||||||.||...||.|||||..|.|||||||||||
RBAM_015140__    793 TTAACAAAAGACGAAATGATCGCTTGTGAAAAATGCCTGATCGGCATCAG    842

BSNT_02530___    843 CAC--AACAAAGCTGTCGGCAGATGGAGAGTTTGACGCGATTATTCATCC    890
                     |||  |||.|  .|.||.||.||.||.||.|||||||..||..|||||||
RBAM_015140__    843 CACGAAACCA--TTATCCGCGGACGGTGAATTTGACGGAATCGTTCATCC    890

BSNT_02530___    891 GAAAATGCTTTCGGGCAAGGCTGTCAAACACGTTTCATAA    930
                     |||.|||||..|.||.||||||||.|||||.|||||.|.|
RBAM_015140__    891 GAAGATGCTGACAGGGAAGGCTGTAAAACATGTTTCCTGA    930


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