Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02550 and RBAM_015280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_02550___lspA.1.9828.seq
# -bsequence dna-align/RBAM_015280___lspA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02550___lspA-RBAM_015280___lspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02550___lspA-RBAM_015280___lspA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02550___lspA
# 2: RBAM_015280___lspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity: 366/466 (78.5%)
# Similarity: 366/466 (78.5%)
# Gaps: 11/466 ( 2.4%)
# Score: 1430.5
#
#
#=======================================
BSNT_02550___ 1 GTGCTGTATTATATGATTGCACTACTTATTATTGCAGCCGATCAATTGAC 50
|||||.||||||.|.||.||.||..||||||||...|||||.||||||||
RBAM_015280__ 1 GTGCTTTATTATCTAATCGCTCTTTTTATTATTATTGCCGACCAATTGAC 50
BSNT_02550___ 51 AAAATGGCTAGTTGTTAAGAACATGGAACTTGGCCAAAGCATTCCGATCA 100
.||||||||.|||||.|...|.||||||.|.||.||||||||.||..|||
RBAM_015280__ 51 CAAATGGCTTGTTGTCAGCCATATGGAATTGGGACAAAGCATACCTGTCA 100
BSNT_02550___ 101 TTGATCAGGTATTCTATATCACCTCCCATCGCAATACGGGTGCTGCATGG 150
|.||||||||..|.||||||||.||.||||||||.|||||.||.||.|||
RBAM_015280__ 101 TCGATCAGGTGCTTTATATCACATCTCATCGCAACACGGGAGCGGCGTGG 150
BSNT_02550___ 151 GGGATATTAGCGGGTCAAATGTGGTTTTTCTACCTCATAACAACCGCTGT 200
||.||.|||||.||.||||||||||||||||||.||||.||.|.|||.||
RBAM_015280__ 151 GGTATTTTAGCCGGCCAAATGTGGTTTTTCTACGTCATTACCATCGCCGT 200
BSNT_02550___ 201 TATTATTGGTATTGTTTATTACATACAGCGTTATACAAAGGGACAAAGGT 250
.|||||.||.||.|||||||||||||||||||||.||||.||.||.|.||
RBAM_015280__ 201 GATTATCGGAATCGTTTATTACATACAGCGTTATGCAAAAGGGCAGATGT 250
BSNT_02550___ 251 TTCTTGGCGTTGCCCTCGGACTT-ATGCTTGGCGGTGCCATCGGCAACTT 299
|.||.||..||.|.||||| ||| |||||.||||||||...|||.|||||
RBAM_015280__ 251 TACTCGGAATTTCTCTCGG-CTTAATGCTGGGCGGTGCGGCCGGAAACTT 299
BSNT_02550___ 300 TATCGATCGGGCTGTCAGACAGGAAGTTGTGGATTTTATCCATGTTATTA 349
|||.||.|||||.|...|.||||||||.|||||||||||.|||||.||.|
RBAM_015280__ 300 TATTGACCGGGCGGCGCGCCAGGAAGTGGTGGATTTTATTCATGTCATCA 349
BSNT_02550___ 350 TTGTCAAT------TACCCGATATTTAACATCGCGGACTCTTCATTATGT 393
|.||..|| ||.|||||||||||.|||||||||||.|||.|.||.
RBAM_015280__ 350 TCGTGGATTATCACTATCCGATATTTAATATCGCGGACTCCTCACTGTGC 399
BSNT_02550___ 394 GTCGGCGTAATGCTTTTATTTATACAAATGCTGTTGGACAGCGGGAAAAA 443
|||||.|||||.|||||||||||.||.||||||||.||||||||||||||
RBAM_015280__ 400 GTCGGTGTAATACTTTTATTTATTCATATGCTGTTTGACAGCGGGAAAAA 449
BSNT_02550___ 444 GAAAAAGGAGCAATAG 459
| |||||||||||.
RBAM_015280__ 450 G---AAGGAGCAATAA 462
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