Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02558 and RBAM_015340

See Amino acid alignment / Visit BSNT_02558 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_02558___pyrAA.1.9828.seq
#    -bsequence dna-align/RBAM_015340___pyrAA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02558___pyrAA-RBAM_015340___pyrAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02558___pyrAA-RBAM_015340___pyrAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02558___pyrAA
# 2: RBAM_015340___pyrAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity:     905/1097 (82.5%)
# Similarity:   905/1097 (82.5%)
# Gaps:           4/1097 ( 0.4%)
# Score: 3733.0
# 
#
#=======================================

BSNT_02558___      1 ATGAAGAGACGATTAGTACTGGAAAACGGAGCGGTATTCGAGGGAGAAGC     50
                     |||||.|||.||.||||.||||||||.|||||||||||.|||||.|||||
RBAM_015340__      1 ATGAAAAGAAGACTAGTGCTGGAAAATGGAGCGGTATTTGAGGGTGAAGC     50

BSNT_02558___     51 CTTCGGAAGCTTAGAACACAACATGGGAGAAGTCGTTTTTAATACTGGGA    100
                     .|||||.|||.|.||.||.|.|..|||.||||||||.||.||.||.||.|
RBAM_015340__     51 ATTCGGGAGCCTGGAGCATACCGCGGGTGAAGTCGTATTCAACACGGGAA    100

BSNT_02558___    101 TGACAGGCTATCAGGAAATTTTATCTGATCCTTCTTACTGCGGACAAATC    150
                     ||||.||.|||||||||||||||||.||.||||||||||||||.||.|||
RBAM_015340__    101 TGACCGGTTATCAGGAAATTTTATCAGACCCTTCTTACTGCGGGCAGATC    150

BSNT_02558___    151 GTAACATTAACATACCCGCTTATCGGAAATTACGGCATTAACCGTGATGA    200
                     ||.||..|.||.||.||.||.|||||.||.|||||.||||||.|.|||||
RBAM_015340__    151 GTGACGCTGACGTATCCACTGATCGGCAACTACGGAATTAACAGAGATGA    200

BSNT_02558___    201 TTTTGAATCCATTACCCCTTTTGTCAAAGGGCTGATCATCAAAGAATTAT    250
                     .|||||||||||.||.||||||||.||||||||||||.|.||||||.|.|
RBAM_015340__    201 CTTTGAATCCATCACTCCTTTTGTAAAAGGGCTGATCGTAAAAGAACTGT    250

BSNT_02558___    251 GTGAGCTGCCTTCCAACTGGCGTTCAGCATACAC-CTTAGACGAGTATTT    299
                     |.|||||||||||||||||||||||.||.||||| ||| |||||||||||
RBAM_015340__    251 GCGAGCTGCCTTCCAACTGGCGTTCGGCTTACACGCTT-GACGAGTATTT    299

BSNT_02558___    300 AAAAATGAAAAACATTCCCGGACTCCAGGGGATTGATACAAGGAAGCTGA    349
                     .|||||||||||.||.|||||..|.||.||||||||.||.||.|||||.|
RBAM_015340__    300 GAAAATGAAAAATATCCCCGGCTTACAAGGGATTGACACGAGAAAGCTCA    349

BSNT_02558___    350 CAAGAATGATCCGCACGGCAGGCGCGCTAAAAGGAACATTCGCTTCATCT    399
                     |||||||||||||||||||.|||||..||||||||||.||.||||||..|
RBAM_015340__    350 CAAGAATGATCCGCACGGCCGGCGCATTAAAAGGAACGTTTGCTTCAAGT    399

BSNT_02558___    400 GATGAAGATATCGAAGCAGTGCTGAAAAGACTGAACGAAACGGAATTGCC    449
                     ||.||..||.|||.||..||.||...|||.|||||.|||||||||.||||
RBAM_015340__    400 GAGGAGAATGTCGGAGAGGTTCTTGCAAGGCTGAAAGAAACGGAACTGCC    449

BSNT_02558___    450 AAGAAATCAAGTATCCCAAGTATCAGCAAAAACAGCATATCCGAGCCCGG    499
                     .|||||||||||..|.||||||||.||.|||||.|||||||||||.||||
RBAM_015340__    450 GAGAAATCAAGTCGCTCAAGTATCTGCGAAAACGGCATATCCGAGTCCGG    499

BSNT_02558___    500 GAAGAGGCAAACGCATCGTCTTGGTTGACTTCGGCATGAAACACGGGATT    549
                     |..|.||||||||||||||..|.||.||.|||||.|||||.|||||.|||
RBAM_015340__    500 GCCGCGGCAAACGCATCGTACTCGTCGATTTCGGTATGAAGCACGGCATT    549

BSNT_02558___    550 CTAAGAGAGCTGAACAAACGGAAATGTGACGTCATCGTTGTGCCTTACAA    599
                     .||||||||.|.||||||.|.|||||.||.||||||||||||||.|||||
RBAM_015340__    550 TTAAGAGAGTTAAACAAAAGAAAATGCGATGTCATCGTTGTGCCGTACAA    599

BSNT_02558___    600 CATTACAGCGGAAGAGGTGCTTCAGCTGAAACCGGACGGTATCATGCTTT    649
                     ..|.||.||||||||.|||||||||||.||.||||||||.||||||||||
RBAM_015340__    600 TGTAACGGCGGAAGAAGTGCTTCAGCTCAAGCCGGACGGCATCATGCTTT    649

BSNT_02558___    650 CTAACGGACCTGGAGACCCGAAGGATGTGCCTGAAGCGATTGAAATGATT    699
                     ||||||||||.|||||.|||||.||||||||.|||||.|||||||||||.
RBAM_015340__    650 CTAACGGACCCGGAGATCCGAAAGATGTGCCGGAAGCCATTGAAATGATA    699

BSNT_02558___    700 AAAGGTGTTCTTGGAAAAGTGCCATTATTCGGAATATGTCTCGGCCACCA    749
                     |||||..|.||.||.||.|||||.|||||||||||.||.|||||||||||
RBAM_015340__    700 AAAGGCATACTCGGGAAGGTGCCGTTATTCGGAATCTGCCTCGGCCACCA    749

BSNT_02558___    750 ATTATTCGCGCTGGCGTGCGGGGCGAATACTGAAAAAATGAAATTCGGCC    799
                     ||||||.||||||||.|.|||.|||.|.||.|||||||||||||||||.|
RBAM_015340__    750 ATTATTTGCGCTGGCATCCGGAGCGGAAACGGAAAAAATGAAATTCGGAC    799

BSNT_02558___    800 ACAGGGGCTCAAACCACCCGGTAAAAGAGCTGGCTACAGGAAAAGTTGCC    849
                     |||||||.||.||.||.|||||.||||||||.||.|||||.|||||.||.
RBAM_015340__    800 ACAGGGGTTCTAATCATCCGGTTAAAGAGCTTGCGACAGGGAAAGTCGCT    849

BSNT_02558___    850 TTAACATCTCAAAACCATGGATATACAGTTTCGTCTATCAG-TAAAACAG    898
                     |||||..||||||||||.||||||||||||||.||.|| || |.|.||||
RBAM_015340__    850 TTAACCGCTCAAAACCACGGATATACAGTTTCTTCAAT-AGATGAGACAG    898

BSNT_02558___    899 AACTGGAAGTGACGCATATCGCAATTAACGACGATACGATTGAAGGGCTG    948
                     |.||.|||||||||||.||.||.||.||.||..|.|||||.|||||.||.
RBAM_015340__    899 AGCTTGAAGTGACGCACATTGCGATCAATGATCAAACGATCGAAGGACTC    948

BSNT_02558___    949 AAGCATAAAACATTGCCGGCATTTACGGTTCAATATCATCCCGAAGCCTC    998
                     ||||||||||||||||||||||||||||||||.||.||.||.|||||.||
RBAM_015340__    949 AAGCATAAAACATTGCCGGCATTTACGGTTCAGTACCACCCTGAAGCTTC    998

BSNT_02558___    999 ACCTGGTCCTGAGGATGCCAACCATCTATTTGACAGATTCATCGAAATGA   1048
                     |||.||.||.||.||.|||||.|||.||||||||||||||||.||..|||
RBAM_015340__    999 ACCGGGACCGGAAGACGCCAATCATTTATTTGACAGATTCATTGACTTGA   1048

BSNT_02558___   1049 TCGAAACAACAGAGAAAGAAGGGGAAGCGGTATGCCAAAACGCGTAG   1095
                     ||||||||||.||||||||||||||||||||||||||||||||||||
RBAM_015340__   1049 TCGAAACAACTGAGAAAGAAGGGGAAGCGGTATGCCAAAACGCGTAG   1095


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