Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02560 and RBAM_015360

See Amino acid alignment / Visit BSNT_02560 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_02560___pyrK.1.9828.seq
#    -bsequence dna-align/RBAM_015360___pyrK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02560___pyrK-RBAM_015360___pyrK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02560___pyrK-RBAM_015360___pyrK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02560___pyrK
# 2: RBAM_015360___pyrK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 811
# Identity:     576/811 (71.0%)
# Similarity:   576/811 (71.0%)
# Gaps:          80/811 ( 9.9%)
# Score: 2030.0
# 
#
#=======================================

BSNT_02560___      1 ATGAAAAAAGCGTATTTGACAGTATGTTCTAACCAGC----AAATTGCAG     46
                     |||||.||||||.|.|||||    |||||.|.|||.|    |||||||.|
RBAM_015360__      1 ATGAAGAAAGCGCACTTGAC----TGTTCAATCCAACTCAGAAATTGCCG     46

BSNT_02560___     47 ACCGGGTGTTTCAAATGGTTCTGAAAGGGGAGCTTGTCCAAGGGTTTACA     96
                     |||||.|.|.|.|.|||||.||||||||.||||||||||   ||    ||
RBAM_015360__     47 ACCGGATTTATAAGATGGTGCTGAAAGGAGAGCTTGTCC---GG----CA     89

BSNT_02560___     97 ----ACC---CCTGGACAGTTCCTTCATCTTAAAGTGAGCGAAGCGGTTA    139
                         |||   ||.||.||.||.||.|||||.||.|||||.||.|||||.|
RBAM_015360__     90 CCTTACCGAGCCGGGTCAATTTCTACATCTGAAGGTGAGTGACGCGGTCA    139

BSNT_02560___    140 CGCCTCTTTTGAGAAGGCCGATCAGCATCGCAGACGTCAACTTT------    183
                     ||||.||.||.|||||.|||.|||||||.||.|||||||| |||      
RBAM_015360__    140 CGCCGCTATTAAGAAGACCGCTCAGCATTGCGGACGTCAA-TTTCGCCGC    188

BSNT_02560___    184 -GAAAAAAATGAAGTCACCATCATTTATC----GGGTAGATGGGGAAGGG    228
                      |      |||||||    |||..|||||    |.|..||.||.||.||.
RBAM_015360__    189 GG------ATGAAGT----ATCCGTTATCTACAGAGCTGACGGTGAGGGA    228

BSNT_02560___    229 ACAAGACTCTTGTCACTGAA--------GCAGCAGGGAGAACTTGTGGAT    270
                     ||..|.||.|||.|...|||        ||.|||||        .|.||.
RBAM_015360__    229 ACGCGTCTTTTGGCCGGGAAAAAAGAGGGCGGCAGG--------ATAGAC    270

BSNT_02560___    271 GTCCTCGGGCCTTTGGGAAATGGCTTTCCTGT------TAATGAAGTTCA    314
                     ||.|||||.|||.|.||.||.||.||.||.||      .|      ||.|
RBAM_015360__    271 GTTCTCGGCCCTCTCGGCAACGGATTCCCCGTCCGGCGGA------TTGA    314

BSNT_02560___    315 ACCCGGAAAGACGGCTTTGCTGGTAGGAGGCGGAGTAGGTGTGCCGCCTC    364
                     ||||||.||.||.||..||.|.||.|||||||||||.||.||.||||||.
RBAM_015360__    315 ACCCGGCAAAACCGCGCTGTTAGTCGGAGGCGGAGTGGGGGTTCCGCCTT    364

BSNT_02560___    365 TCCAAGAGCTGTCGAAACGCTTGATTGAAAAAGGGGTAAATGTCATCCAC    414
                     |.||.||.|||||.||.||..|||..||||||||.|||||.|||||.||.
RBAM_015360__    365 TGCAGGAACTGTCAAAGCGTCTGACGGAAAAAGGCGTAAACGTCATTCAT    414

BSNT_02560___    415 GTTTTAGGATTCCAATCGGCAAAGGATGTTTTTTACGAGGAAGAATGCCG    464
                     ||..|.|||||.|||||.||||||||||||||||||||..|.|||||.||
RBAM_015360__    415 GTGCTTGGATTTCAATCAGCAAAGGATGTTTTTTACGAACAGGAATGTCG    464

BSNT_02560___    465 -GCAGTACGGAGACACGTATGTGGCAACAGCTGACGGAAGCTACGGGGAA    513
                      || ||||||||||||.||||||||.||.||||||||||..||.||.||.
RBAM_015360__    465 TGC-GTACGGAGACACCTATGTGGCGACGGCTGACGGAACATATGGAGAG    513

BSNT_02560___    514 ACCGGATTTGTCACAGATGTGATTAAACG-GAAAA--ATCTAGAGTTTGA    560
                     |..||.||||||||.|||||.||   .|| |||||  |.||.||.||.||
RBAM_015360__    514 AAAGGGTTTGTCACCGATGTCAT---CCGTGAAAAGCAGCTCGAATTCGA    560

BSNT_02560___    561 TATCCTCCTCAGCTGCGGTCCGACACCGATGCTCAAGGCGTTAAAACAGG    610
                     |.||||.||.||||||||.||||||||||||||.||.||..|.||.|||.
RBAM_015360__    561 TGTCCTGCTAAGCTGCGGACCGACACCGATGCTGAAAGCTCTGAAGCAGC    610

BSNT_02560___    611 AATATGCCCATAAAGAAGTATATCTGTCCATGGAGGAACGAATGGGCTGC    660
                     |.||.|.|||||||||.||.|||||.||.|||||.||.||.|||||||||
RBAM_015360__    611 AGTACGGCCATAAAGAGGTTTATCTTTCGATGGAAGAGCGGATGGGCTGC    660

BSNT_02560___    661 GGAATCGGCGCATGCTTCGCGTGTGTGTGCCATACAAACGAAAGTGAGAC    710
                     ||.|||||.||.||||||||.||.|||||||..||....|||||.||.||
RBAM_015360__    661 GGCATCGGAGCCTGCTTCGCCTGCGTGTGCCGCACGGGTGAAAGCGATAC    710

BSNT_02560___    711 ATCCTATGTAAAAGTATGTCTCGACGGGCCTGTATTTAAAGCTCAGGAGG    760
                     ||||||||||||.||.||.||.||||||||.||||||||||||.||||||
RBAM_015360__    711 ATCCTATGTAAAGGTCTGCCTTGACGGGCCGGTATTTAAAGCTGAGGAGG    760

BSNT_02560___    761 TGGCGCTGTAA    771
                     |||||||||||
RBAM_015360__    761 TGGCGCTGTAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02560 and RBAM_015360

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
