Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02575 and RBAM_015470

See Amino acid alignment / Visit BSNT_02575 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:24
# Commandline: needle
#    -asequence dna-align/BSNT_02575___yloA.1.9828.seq
#    -bsequence dna-align/RBAM_015470___yloA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02575___yloA-RBAM_015470___yloA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02575___yloA-RBAM_015470___yloA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02575___yloA
# 2: RBAM_015470___yloA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1730
# Identity:    1342/1730 (77.6%)
# Similarity:  1342/1730 (77.6%)
# Gaps:          40/1730 ( 2.3%)
# Score: 5117.5
# 
#
#=======================================

BSNT_02575___      1 ATGTCGTTTGATGGCATGTTTACATACGGAATGACACACGAACTTAACGA     50
                     |||||.||||||||||||||||||||||||||||||||.|||.|.|||  
RBAM_015470__      1 ATGTCTTTTGATGGCATGTTTACATACGGAATGACACATGAATTAAAC--     48

BSNT_02575___     51 GAAAATAATGGGCGGA---CGAATTACAAAAGTCCATCAGCCATATAAGC     97
                      ||....||.|.||||   ||.|||||.|.||||||||||||.|.|||||
RBAM_015470__     49 -AACCGGATCGCCGGAGGCCGGATTACGAGAGTCCATCAGCCTTTTAAGC     97

BSNT_02575___     98 ACGATGTGATTTTCCACATCCGTGCCAAGGGAAAAAACCAAAAACTATTA    147
                     ||||||||||.||.||.|||||.||.||.|||||||||||.|||.|||||
RBAM_015470__     98 ACGATGTGATATTTCATATCCGCGCTAACGGAAAAAACCATAAATTATTA    147

BSNT_02575___    148 TTATCGGCACATCCGAGCTATTCACGGGTGCATATCACGGCACAAGCTTA    197
                     ||||||||.|||||||||||||||||||||||.||.||....||.||.||
RBAM_015470__    148 TTATCGGCGCATCCGAGCTATTCACGGGTGCACATGACAAACCAGGCCTA    197

BSNT_02575___    198 TGAAAATCCAAGCGAACCTCCAATGTTTTGCATGTTGCTGAGAAAGCATA    247
                     |||||||||.|||||.||.||.||||||||.|||.||||.||||||||||
RBAM_015470__    198 TGAAAATCCGAGCGAGCCGCCGATGTTTTGTATGCTGCTCAGAAAGCATA    247

BSNT_02575___    248 TCGAAGGCGGATTCATTGAGAAAATTGAACAAGCGGGCTTAGACCGCATT    297
                     |.|||||||||||.|||||||||||.|||||.||.||.||||||||.|||
RBAM_015470__    248 TAGAAGGCGGATTTATTGAGAAAATAGAACAGGCCGGATTAGACCGGATT    297

BSNT_02575___    298 ATGATTTTTCATATCAAAAGCCGAAACGAAATTGGCGATGAAACCGTACG    347
                     |||||.||.|..||.||||||.||||.|||||.|||||.||||||||..|
RBAM_015470__    298 ATGATATTCCGGATAAAAAGCAGAAATGAAATCGGCGACGAAACCGTCAG    347

BSNT_02575___    348 AAAGCTTTATGTAGAAATTATGGGCCGCCACAGCAATATCATTTTGACTG    397
                     ||..||.|||||.|||||||||||.||.|||||||||||.|||.||||||
RBAM_015470__    348 AACACTGTATGTGGAAATTATGGGACGGCACAGCAATATTATTCTGACTG    397

BSNT_02575___    398 ACGCAGCAGAAAATGTGATCATCGACGGACTTAAGCACTTATCACCGTCA    447
                     |||.||.||.|   |..|||||||||||.||.||.||.|||||.|||||.
RBAM_015470__    398 ACGGAGAAGGA---GCCATCATCGACGGGCTGAAACATTTATCTCCGTCG    444

BSNT_02575___    448 ATGAACAGCTACCGTACAGTACTGCCCGGCCAAGATTATAAGCTTCCGCC    497
                     ||||||||||||||.||.||.|||||.|||.|.|||||.||||||||.||
RBAM_015470__    445 ATGAACAGCTACCGGACCGTTCTGCCGGGCTATGATTACAAGCTTCCTCC    494

BSNT_02575___    498 TGCCCAGGACAAAATATCGCCTCTTGAGGCGTCAGAAGATGATATTTTGC    547
                     .||.|||||.|||||.|||||.||||..|||...|||||.||..||||||
RBAM_015470__    495 CGCTCAGGAAAAAATTTCGCCGCTTGCCGCGGATGAAGAGGACGTTTTGC    544

BSNT_02575___    548 GTCACCTCAGCTTTCAAGAAGGAAAGCTTGATAAACAAATTGTC-GACCA    596
                     ||.|.|||||.|||||.||||||..||||||..|.||.||.||| || ||
RBAM_015470__    545 GTTATCTCAGTTTTCAGGAAGGACGGCTTGACCAGCAGATCGTCAGA-CA    593

BSNT_02575___    597 CTTTTCAGGGGTGTCTCCGCTTTTCGCCAAAGAAGCGGTTCACAGAGCAG    646
                     |||.||.||.||.||||||||.||.||.||||||||.||.||||||||.|
RBAM_015470__    594 CTTCTCCGGTGTTTCTCCGCTGTTTGCAAAAGAAGCCGTGCACAGAGCGG    643

BSNT_02575___    647 GCCTTGCCAACAAAGTCACACTGCCAAAAGCATTGCTGGCACTGTT---T    693
                     |.||.||.||||||.|.||.|||||.||..|..||.|.|.|.||||   |
RBAM_015470__    644 GTCTCGCTAACAAAATAACGCTGCCGAAGACGCTGATTGAAATGTTCCAT    693

BSNT_02575___    694 GCCGAAGTGAAAGA--GCACCGTTT-CATTCCCAACATTACGACTGTAAA    740
                     |||   ||||||||  ||| .|||| ||  ||.|||||||||||.|....
RBAM_015470__    694 GCC---GTGAAAGATTGCA-GGTTTACA--CCGAACATTACGACAGCCGG    737

BSNT_02575___    741 CGGAAAGGAATATTTTTATCTGCTGGAGCTGACTCATCTAAAGGGCGAAG    790
                     ||||||||||||.||||||||.|||...||.||.|||.||||.||.||.|
RBAM_015470__    738 CGGAAAGGAATACTTTTATCTCCTGTCTCTCACACATGTAAACGGAGAGG    787

BSNT_02575___    791 CGCGCAGTTTTGAGTCATTAAGCGAACTGCTCGACCGTTTTTATTTCGGA    840
                     .|||||..|||.|.|||.|.||.||.|||.|.|||||.|||||||||||.
RBAM_015470__    788 AGCGCACCTTTCACTCACTGAGTGAGCTGTTGGACCGGTTTTATTTCGGC    837

BSNT_02575___    841 AAAGCTGAACGAGACCGGGTCAAGCAACAGGCTCAGGATCTTGAGCGTTT    890
                     ||.||.|||||.|||||.|||||.||.||||||||||||||.|||||.||
RBAM_015470__    838 AAGGCGGAACGCGACCGCGTCAAACAGCAGGCTCAGGATCTCGAGCGGTT    887

BSNT_02575___    891 TGTTGTGAACGAACGGAAGAAGAATGCCAACAAAATCAAAAAATTAGAGA    940
                     |||.|..||.||||||||.|||||.|||||.||.||.|||||..|.||.|
RBAM_015470__    888 TGTCGCAAATGAACGGAAAAAGAACGCCAATAAGATAAAAAAGCTGGAAA    937

BSNT_02575___    941 AAACCCTGGAGTATTCGGAAAACGCGAAGGAATTTCAGCTTTACGGAGAG    990
                     |.||.||.||.||.||.|||||.|||||||||||.|||||.|||||.||.
RBAM_015470__    938 AGACGCTCGACTACTCAGAAAATGCGAAGGAATTCCAGCTATACGGCGAA    987

BSNT_02575___    991 CTTTTAACCGCTAATTTATATATGCTGAAAAAAGGTGATAAACAGGCTGA   1040
                     ||..|.||.||.|||||.||||||||||||||||||||.|||.|.||.||
RBAM_015470__    988 CTGCTGACGGCGAATTTGTATATGCTGAAAAAAGGTGACAAAGAAGCGGA   1037

BSNT_02575___   1041 GGTCATCAATTATTATGATGAAGAAAGCCCGACAATCACGATTCCTTTAA   1090
                     .||||||||||||||||||||||||||...||||.|.||.||.|||||||
RBAM_015470__   1038 AGTCATCAATTATTATGATGAAGAAAGTAAGACAGTGACCATCCCTTTAA   1087

BSNT_02575___   1091 ACCCGAACAAAACGCCTTCTGAAAACGCACAGGCCTATTTCACGAAGTAT   1140
                     |.|||||||||||.||.||.||||||||.|||...|||||.||.|||||.
RBAM_015470__   1088 ATCCGAACAAAACACCGTCAGAAAACGCGCAGATGTATTTTACAAAGTAC   1137

BSNT_02575___   1141 CAGAAAGCGAAAAATTCGGTCGCAGTTGTCGAGGAGCAAATCAGGCTGGC   1190
                     ||.||.|||||.|||||.||||..||.||..|..|.||.|||.|.|||||
RBAM_015470__   1138 CAAAAGGCGAAGAATTCCGTCGAGGTGGTAAAACAACAGATCCGTCTGGC   1187

BSNT_02575___   1191 ACAGGAAGAGATCGAATATTTTGATCAGCTGATTCAGCAGCTTTCGTCCG   1240
                     ..||||.||.||||..|||||.|||||||||||.||||||||.||.||||
RBAM_015470__   1188 CGAGGAGGAAATCGCTTATTTCGATCAGCTGATCCAGCAGCTCTCCTCCG   1237

BSNT_02575___   1241 CTTCTCCCC--GGGATA-TCAGCGAAATCAGGGAAGAGCTTGTAGAGGGC   1287
                     |  ||||.|  .||||| ||| ||||||.|||||.||||||||.||.|||
RBAM_015470__   1238 C--CTCCACAAAGGATATTCA-CGAAATAAGGGAGGAGCTTGTGGAAGGC   1284

BSNT_02575___   1288 AAATATTTACGCCCTAAGCAGCAAAAAGGCCAGAAAAAGCAAAAACCGCA   1337
                     ||||||.|.||.||.||.|||||...|||.||||||||.||.||.|.|||
RBAM_015470__   1285 AAATATCTGCGACCGAAACAGCAGCGAGGACAGAAAAAACAGAAGCAGCA   1334

BSNT_02575___   1338 CAATCCGGTGTTAGAAACATATGAATC--CACCTCAGGG--CTGACAATT   1383
                     |..|||.||.||.||...|||||||||  |||    |||  .||||.|||
RBAM_015470__   1335 CGTTCCTGTTTTGGAGCAATATGAATCTTCAC----GGGGATTGACGATT   1380

BSNT_02575___   1384 TTAGTGGGTAAGAACAATCGTCAAAATGAATATTTAACGACAAGAGTGGC   1433
                     .|.||.||.||.||||||...||||||||.||.||||||||||.||..||
RBAM_015470__   1381 CTTGTCGGCAAAAACAATAAACAAAATGAGTACTTAACGACAAAAGCTGC   1430

BSNT_02575___   1434 GGCCAGAGACGATATCTGGCTTCACACGAAGGACATTCCAGGCTCCCACG   1483
                     .||.||.||.|||.|.|||.|.||||||||.||||||||.||.|||||||
RBAM_015470__   1431 CGCAAGGGATGATTTATGGTTCCACACGAAAGACATTCCGGGTTCCCACG   1480

BSNT_02575___   1484 TTGTGATCAGAAGCAGCGAACCGGATGAGCAAACAATCATGGAAGCCGCG   1533
                     |||||||.|.|||||.|||.||||||||.|||.|.||..||||.||.||.
RBAM_015470__   1481 TTGTGATTAAAAGCAACGATCCGGATGAACAATCCATACTGGAGGCGGCT   1530

BSNT_02575___   1534 ACAATTGCAGCTTATTTTTCAAAAGCTAAAGATTCAAGTTCAGTGCCTGT   1583
                     .|.||.||.|||||||||||.||.||.||||||||..|.||.||.||.||
RBAM_015470__   1531 GCGATCGCCGCTTATTTTTCCAAGGCGAAAGATTCCGGCTCCGTTCCCGT   1580

BSNT_02575___   1584 AGATTATACAAAAATCAGGCATGTCAAAAAACCAAACGGCGCGAAACCCG   1633
                     .|||||||||||||||||.||.||.|||||.|||||||||||.||.||||
RBAM_015470__   1581 TGATTATACAAAAATCAGACACGTGAAAAAGCCAAACGGCGCAAAGCCCG   1630

BSNT_02575___   1634 GTTTCGTCACCTATGACAGCCAGCATACCGTCTTTGTCACGCCTGATGCT   1683
                     |.||.||||||||||||||||||||||||||.||||||||.||||||||.
RBAM_015470__   1631 GATTTGTCACCTATGACAGCCAGCATACCGTATTTGTCACACCTGATGCC   1680

BSNT_02575___   1684 GATACTGTCATCAAGCTCAAAAAAAGCTGA   1713
                     ||...||||||...|||.||||||   |.|
RBAM_015470__   1681 GACCTTGTCATACGGCTGAAAAAA---TAA   1707


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