Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02584 and RBAM_015540

See Amino acid alignment / Visit BSNT_02584 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:25
# Commandline: needle
#    -asequence dna-align/BSNT_02584___priA.1.9828.seq
#    -bsequence dna-align/RBAM_015540___priA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02584___priA-RBAM_015540___priA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02584___priA-RBAM_015540___priA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02584___priA
# 2: RBAM_015540___priA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2465
# Identity:    1894/2465 (76.8%)
# Similarity:  1894/2465 (76.8%)
# Gaps:         100/2465 ( 4.1%)
# Score: 7241.5
# 
#
#=======================================

BSNT_02584___      1 ATGAATTTTGCCGAAGTCATCGTTGATGTGAGCACCAAAAATATAGACAG     50
                     ||||||.|.||.||||||||.||.|||||.|||.|||||||.||.|||||
RBAM_015540__      1 ATGAATGTAGCAGAAGTCATTGTCGATGTCAGCTCCAAAAACATTGACAG     50

BSNT_02584___     51 GCCTTTTGATTATAAAATCCCAGACCATCTCAAGGGCATGATCAAAACGG    100
                     .||.||||||||.|||||.||.||.|||.|.||.||.||||||.||...|
RBAM_015540__     51 ACCCTTTGATTACAAAATTCCCGATCATTTAAAAGGGATGATCGAAGTCG    100

BSNT_02584___    101 GGATGCGGGTCATTGTTCCGTTTGGCCCCCGTAAGATTCAAGGATTTGTG    150
                     |.||||||||.|||||.|||||||||||.||.|||.||||||||||||||
RBAM_015540__    101 GCATGCGGGTGATTGTCCCGTTTGGCCCGCGCAAGCTTCAAGGATTTGTG    150

BSNT_02584___    151 ACAGCAGTCAAAGAAGCATCTGACCTA----TCGGGAAAATCTGTCAAGG    196
                     ||.|...|.||||||.|.|||||..||    .|||    .||..|.||||
RBAM_015540__    151 ACCGGTTTGAAAGAATCGTCTGAATTAAACGGCGG----CTCAATGAAGG    196

BSNT_02584___    197 AAGTAGAG-GGTTTATTAGATCTTACACCTGTTCTGACAGAGGAGCTTAT    245
                     ||||.||| .|.||.|| |||.|.||.||.||||||||.|||||.||.||
RBAM_015540__    197 AAGTCGAGAAGCTTCTT-GATTTGACGCCCGTTCTGACTGAGGAACTGAT    245

BSNT_02584___    246 GGATCTGTCATCATGGCTGTCAGACAAAACGCTGTCTTTTAAAATAACGG    295
                     |.|.|||||.||||||||.||.||||||||||||||.||||||||.||||
RBAM_015540__    246 GCAGCTGTCTTCATGGCTTTCTGACAAAACGCTGTCGTTTAAAATCACGG    295

BSNT_02584___    296 CGCTTCAAGCAATGCTGCCTGCCGCCTTAAAGGCGAAATATGAAAAAGAA    345
                     |||||||.|||||||||||.|||||..|.||||||||.||.||.|||||.
RBAM_015540__    296 CGCTTCAGGCAATGCTGCCCGCCGCACTGAAGGCGAAGTACGAGAAAGAG    345

BSNT_02584___    346 TTAAAAATTGCACACG-----GCGCCGATCTTCCGCCGCAAGTGGAACGG    390
                     .|.|||.|.|...|||     ||||.||     |.|||.|..|..|||.|
RBAM_015540__    346 CTGAAAGTCGTTGACGAAGAAGCGCTGA-----CACCGGACATCAAACAG    390

BSNT_02584___    391 CTGTTTACTGAAACAAAGACG-CTGTTGTATTCGGATATACCCGATCATG    439
                     || |||...|||.||||.|.| ||..||||.||||||||..||||     
RBAM_015540__    391 CT-TTTCAGGAATCAAAAAAGTCTTCTGTACTCGGATATTACCGA-----    434

BSNT_02584___    440 ATACGCTGAAA-----CTGATTCAAAGGCATGTTCAA------------A    472
                           |||||     ||  |||   |.|| .|||||            |
RBAM_015540__    435 ------TGAAAGCATTCT--TTC---GTCA-CTTCAAAAATTCGTGCGCA    472

BSNT_02584___    473 AAGGGGACATTGACGTGACGTATAAAGTCGCGCAAAAAACCAATAAAAAA    522
                     ||||...||||||.||.||.|||||||||||.||||||||.|||||||||
RBAM_015540__    473 AAGGAAGCATTGATGTCACATATAAAGTCGCCCAAAAAACGAATAAAAAA    522

BSNT_02584___    523 ATGGTCAGGCAT-ATTCAGGCAAATGCGAGTAAAGAAGAGCTTGCTAAGC    571
                     |||.|| .|||| ||..|.||....|||...||||||||.||.||...||
RBAM_015540__    523 ATGATC-CGCATGATCGAAGCGGGGGCGGACAAAGAAGAACTCGCCCGGC    571

BSNT_02584___    572 AGGCTGAGGGATTGTCCCGCCAAGCAG----CAAAACAGCAGGCGATTCT    617
                     |.||.||.|.||||    .|.||||||    |.|||||||...|..|.||
RBAM_015540__    572 ACGCAGATGCATTG----ACAAAGCAGGCTTCTAAACAGCTCACCGTGCT    617

BSNT_02584___    618 TCACTT-TCTCATCTCTGAGCCGGAAGGTGTGAAAATTCCTGCTGCGGAA    666
                     | |||| |.|.|||     |.||| .||.|..||.|||.|.||.||.||.
RBAM_015540__    618 T-ACTTATTTTATC-----GGCGG-GGGAGCAAAGATTTCCGCGGCCGAG    660

BSNT_02584___    667 TTGTGCAAAAAAACGGACACGAGCTCTGCAACCATCAAAACCCTTATCCA    716
                     .|.||||||||.||.||..|.||.||.||.||..|.|||||.|||.|..|
RBAM_015540__    661 CTTTGCAAAAAGACCGATTCCAGTTCCGCGACGCTGAAAACGCTTCTTAA    710

BSNT_02584___    717 AAAAGGGCTTTTGAAGGAAAGCTATGAAGAGGTTTACAGAGATCCCTATC    766
                     |||.||||||.|.|.||||||||.|||.|||||||||.|.|||||.||||
RBAM_015540__    711 AAAGGGGCTTCTTACGGAAAGCTTTGAGGAGGTTTACCGCGATCCTTATC    760

BSNT_02584___    767 AGGACAAAATGTTCAAAAAAACAGAGCCCCTGCCGCTGACAGACGAACAG    816
                     ||||||.|||||||||||||||||||||.||..|.||.|||||.||.|||
RBAM_015540__    761 AGGACAGAATGTTCAAAAAAACAGAGCCGCTCTCTCTTACAGAAGAGCAG    810

BSNT_02584___    817 AGGGCTGCCTTCGAGCCCATACGCGAGACATTGGACAGC----------G    856
                     ..|||.||.||.|||||.||    .|.|||      |||          .
RBAM_015540__    811 CAGGCCGCTTTTGAGCCGAT----TAAACA------AGCTGTAGCCGATC    850

BSNT_02584___    857 ATGAGCATAAAGTGTTCCTCCTTCACGGCGTGACAGGAAGCGGAAAAACC    906
                     |||..|||.|.||.||.||.|||||||||||.||.||||||||.|||||.
RBAM_015540__    851 ATGTCCATCACGTCTTTCTGCTTCACGGCGTCACGGGAAGCGGCAAAACG    900

BSNT_02584___    907 GAAATTTATCTGCAATCAATTGAAAAAGTACTGGCGAAAGGAAAAGAAGC    956
                     ||||||||.||||||||.|||||||||||.|||||.||||||.|||||||
RBAM_015540__    901 GAAATTTACCTGCAATCCATTGAAAAAGTGCTGGCAAAAGGACAAGAAGC    950

BSNT_02584___    957 CATCGTCCTCGTACCGGAAATATCGCTGACGCCGCAAATGGTCAACCGCT   1006
                     ||||||.|||||.||||||||.|||.||||.|||||||||||||||||.|
RBAM_015540__    951 CATCGTGCTCGTTCCGGAAATCTCGTTGACACCGCAAATGGTCAACCGTT   1000

BSNT_02584___   1007 TCAAGGGCCGCTTCGGCTCCCAGGTGGCAGTCATGCACAGCGGTTTATCC   1056
                     |.||.||||||||||||||.|||||.||.||||||||||||||.||||||
RBAM_015540__   1001 TTAAAGGCCGCTTCGGCTCACAGGTTGCGGTCATGCACAGCGGATTATCC   1050

BSNT_02584___   1057 ACAGGAGAAAAATATGACGAGTGGCGTAAAATCCACCGGAAGGAAGTACG   1106
                     |||||.||||||||.||.||.|||||.||.||.||.||.||||||||.||
RBAM_015540__   1051 ACAGGTGAAAAATACGATGAATGGCGGAAGATTCAGCGCAAGGAAGTCCG   1100

BSNT_02584___   1107 GCTTGTCGTCGGTGCCAGATCCGCGATTTTTGCTCCGTTTGAAAATCTAG   1156
                     ||||||||||||.||||||||.||.||.|||||.||||||||||||||.|
RBAM_015540__   1101 GCTTGTCGTCGGAGCCAGATCGGCCATCTTTGCCCCGTTTGAAAATCTCG   1150

BSNT_02584___   1157 GAATGATAATCATCGATGAAGAGCACGAGTCTTCCTATAAACAGGAAGAA   1206
                     |.|||||.||.||.||||||||||||||.|||||||||||.|||||.|||
RBAM_015540__   1151 GCATGATCATTATTGATGAAGAGCACGAATCTTCCTATAAGCAGGAGGAA   1200

BSNT_02584___   1207 ATGCCGCGCTATCATGCGAAAGAGGTGGCAATCAAGCGGGCCGAGCATCA   1256
                     ||||||||.||||||||.||.||.||.||.|||...||||||||||||||
RBAM_015540__   1201 ATGCCGCGGTATCATGCAAAGGACGTAGCCATCCGCCGGGCCGAGCATCA   1250

BSNT_02584___   1257 CAGCTGCCCGGTTGTATTAGGGAGTGCTACGCCGACATTAGAGTCATATG   1306
                     ||||||.|||||.||..|.|||||.||.|||||||||||.|||||||.||
RBAM_015540__   1251 CAGCTGTCCGGTCGTCCTCGGGAGCGCCACGCCGACATTGGAGTCATTTG   1300

BSNT_02584___   1307 CAAGAGCGCAAAAGGGCGTATACGAGCTTCTTTCACTGAAGCACCGTGTT   1356
                     |..|.|||.||||.|||||.||.|||||.|||.||.|.||.||.||.||.
RBAM_015540__   1301 CGCGGGCGAAAAAAGGCGTTTATGAGCTGCTTCCATTAAAACATCGCGTA   1350

BSNT_02584___   1357 AACCATCGGGTGATGCCTGAGGTTTCGCTTGTCGATATGAGAGAGGAGCT   1406
                     ||.|..|.|.|.||||||||.|||||.||.||.|||||||||||.||.||
RBAM_015540__   1351 AATCGCCAGCTCATGCCTGACGTTTCTCTCGTTGATATGAGAGAAGAACT   1400

BSNT_02584___   1407 TAGAAACGGCAATCGCTCGATGTTTTCAGTTGAATTGATGGAAAAGCTTG   1456
                     .|||||||||||..|.||.|||||||||...|||.||||||||.||||.|
RBAM_015540__   1401 GAGAAACGGCAACAGATCAATGTTTTCAAGAGAACTGATGGAACAGCTGG   1450

BSNT_02584___   1457 AAGAAACGATTGCCAAGGGTGAGCAGGCGGTGCTGTTTTTAAATAAGAGG   1506
                     ||||.|.|.||||.||....||||||||.||.||.|||.|.|||||..||
RBAM_015540__   1451 AAGAGAAGCTTGCAAAAAAAGAGCAGGCCGTCCTTTTTCTGAATAAACGG   1500

BSNT_02584___   1507 GGCTATTCTTCCTTTGTGATGTGCAGGGATTGCGGCTATGTCCCGCAATG   1556
                     ||.|||||.||.||||||||||||.||||.|||||.|||||.||||||||
RBAM_015540__   1501 GGGTATTCCTCGTTTGTGATGTGCCGGGACTGCGGTTATGTGCCGCAATG   1550

BSNT_02584___   1557 CCCGCACTGCGACATTTCCATGACGTATCATCGTTACGGCCAAAGGCTGA   1606
                     .|||||.|||||||||||.|||||.|||||.||.|||||.||||||||||
RBAM_015540__   1551 TCCGCATTGCGACATTTCGATGACTTATCACCGCTACGGACAAAGGCTGA   1600

BSNT_02584___   1607 AATGCCATTATTGCGGACATGAAGAGCCTGTTCCGCACACTTGTCCTGAA   1656
                     ||||||||||.|||||.|||||.||.|||||.|||...||.||.||.|||
RBAM_015540__   1601 AATGCCATTACTGCGGCCATGAGGAACCTGTCCCGGGAACATGCCCGGAA   1650

BSNT_02584___   1657 TGCGCAAGCGAGCATATCCGCTTTTTCGGAACGGGAACACAGCGAGTGGA   1706
                     ||||..|||||.|||||||||||||||||.||||||||.|||||.|||||
RBAM_015540__   1651 TGCGGCAGCGAACATATCCGCTTTTTCGGCACGGGAACGCAGCGTGTGGA   1700

BSNT_02584___   1707 GGAAGAGCTGACAAAAGTGCTGCC-AAGTGCGAGAGTGATTCGGATGGAT   1755
                     |||.|||||.||.||||||||||| .|| |||.|.|||||..||||||||
RBAM_015540__   1701 GGAGGAGCTTACCAAAGTGCTGCCTCAG-GCGCGCGTGATCAGGATGGAT   1749

BSNT_02584___   1756 GTTGACACGACATCACGGAAAGGCGCCCATGAAAAATTACTGTCAGCTTT   1805
                     ||.|||||.||.|||.|.||||||||||||||||||.|..|||||||.||
RBAM_015540__   1750 GTGGACACCACTTCAAGAAAAGGCGCCCATGAAAAACTGTTGTCAGCGTT   1799

BSNT_02584___   1806 CGGAGAAGGAAAAGCGGATATTCTTCTCGGAACGCAAATGATCGCGAAAG   1855
                     |||.|||||.||.||||||||.||.|||||.||||||||||||||.||||
RBAM_015540__   1800 CGGTGAAGGGAAGGCGGATATCCTGCTCGGTACGCAAATGATCGCAAAAG   1849

BSNT_02584___   1856 GGCTTGATTTTCCGAATGTCACGCTTGTCGGAGTGTTAAGTGCTGATACA   1905
                     ||||||||||||||||.||.|||||.||||||||.|||||.||.|||||.
RBAM_015540__   1850 GGCTTGATTTTCCGAACGTGACGCTCGTCGGAGTATTAAGCGCAGATACG   1899

BSNT_02584___   1906 ACACTTCATATTCCTGATTTCAGATCGGCTGAAAAAACATTTCAGCTGTT   1955
                     ||.|||||.||.|||||||||||..|.||.||.||.|||||.||||||.|
RBAM_015540__   1900 ACGCTTCACATCCCTGATTTCAGGGCCGCGGAGAAGACATTCCAGCTGCT   1949

BSNT_02584___   1956 AACGCAAGTCAGCGGCCGGGCAGGCAGGCATGAAAAGCCCGGCCATGTCA   2005
                     .|||||.||.|||||||||||.||..|||||||||||||.||....||..
RBAM_015540__   1950 GACGCAGGTAAGCGGCCGGGCCGGGCGGCATGAAAAGCCGGGAACGGTGG   1999

BSNT_02584___   2006 TCATTCAAACGTATACACCGTCTCATTACAGTATCCAGCTGACGAAAACA   2055
                     |||||||||||||||||||||||||||||||.||.||||||||||||||.
RBAM_015540__   2000 TCATTCAAACGTATACACCGTCTCATTACAGCATTCAGCTGACGAAAACG   2049

BSNT_02584___   2056 CACGATTATGAAACGTTCTATCAGCATGAAATGGCGCACAGGAGAGAGCA   2105
                     |||||.||||||||.||.|.||||||.||||||||||||||.||.|..||
RBAM_015540__   2050 CACGACTATGAAACTTTTTTTCAGCAGGAAATGGCGCACAGAAGGGCCCA   2099

BSNT_02584___   2106 ATCCTATCCGCCATACTACTATTTGGCTCTTGTGACTGTTTCTCATGAGG   2155
                     .||.||.|||||.||.||.||..||||.||.|||||.|||||||||||.|
RBAM_015540__   2100 GTCATACCCGCCTTATTATTACGTGGCGCTGGTGACCGTTTCTCATGAAG   2149

BSNT_02584___   2156 AAGTGGCGAAAGCAGCGGTTACAGCTGAAAAAATCGCTCATTTTTTGAAA   2205
                     |||.|||.|||||.|||||.||.||.|||||.||..|..|.|.|||.|..
RBAM_015540__   2150 AAGCGGCAAAAGCCGCGGTCACCGCAGAAAAGATTACAAACTATTTAAGG   2199

BSNT_02584___   2206 GCAAACTGCGGAGCTGACACGAAAATTCTCGGACCAAGC-GCGTCGCCGA   2254
                     ||....|||||..||||.||||||||||||||.|| .|| ||.||.||||
RBAM_015540__   2200 GCGGGATGCGGGCCTGATACGAAAATTCTCGGGCC-GGCGGCTTCCCCGA   2248

BSNT_02584___   2255 TAGCCAGGATCAAAGATAGATATCGCTATCAATGCGTGATAAAATACAAA   2304
                     |.||||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_015540__   2249 TCGCCAGGATCAAAGATAGATATCGCTATCAATGCGTGATAAAATACAGA   2298

BSNT_02584___   2305 CAGGAAACCCAGTTATCTGCTTTA-TTGAAGAAGATACTGGAACATTATA   2353
                     |||||||.|.|||| .|.|.||.| |||||.|||||||||||.||.||||
RBAM_015540__   2299 CAGGAAAACGAGTT-GCAGATTCAGTTGAAAAAGATACTGGAGCACTATA   2347

BSNT_02584___   2354 AACGCGAAATTGAACAAAAACATGTAATGATTTCAATTGATATGAATCCT   2403
                     |||||||.||||..|||||.|||||.|||||||||||.|||||||||||.
RBAM_015540__   2348 AACGCGACATTGCGCAAAAGCATGTCATGATTTCAATCGATATGAATCCG   2397

BSNT_02584___   2404 TATATGATGATGTAA   2418
                     ||.|||.||||||||
RBAM_015540__   2398 TACATGCTGATGTAA   2412


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