Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02587 and RBAM_015570

See Amino acid alignment / Visit BSNT_02587 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:25
# Commandline: needle
#    -asequence dna-align/BSNT_02587___yloM.1.9828.seq
#    -bsequence dna-align/RBAM_015570___rsmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02587___yloM-RBAM_015570___rsmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02587___yloM-RBAM_015570___rsmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02587___yloM
# 2: RBAM_015570___rsmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1376
# Identity:    1073/1376 (78.0%)
# Similarity:  1073/1376 (78.0%)
# Gaps:          64/1376 ( 4.7%)
# Score: 4196.5
# 
#
#=======================================

BSNT_02587___      1 ATGAAAAAAACTAGTGTTCGTGACATCGCCCTTGAGGCGC-TGATCAAAT     49
                     |||||.||||.||.|||.||.||..||||||||||.|||| ||| .||..
RBAM_015570__      1 ATGAAGAAAATTAATGTCCGGGAGCTCGCCCTTGAAGCGCTTGA-GAAGC     49

BSNT_02587___     50 TAGAACAAAACCAGGCATACAGCAACCTGCTGCTGAAATCGGTCATTAAA     99
                     |.||.|||||.||||||||||||||||||||.||.|.||||||.||.|  
RBAM_015570__     50 TTGAGCAAAATCAGGCATACAGCAACCTGCTTCTTACATCGGTTATCA--     97

BSNT_02587___    100 TCAAATGAA----CTGAGTGATCAGGACAGAGGGCTTTTGACTGAACTTG    145
                       |||.|||    ||.||.||||||||||||||.||..||||.||.||||
RBAM_015570__     98 --AAACGAACACGCTCAGCGATCAGGACAGAGGACTGCTGACAGAGCTTG    145

BSNT_02587___    146 TCTATGGTACATTACAAAATAAGATCGCGCTT-GATTATATGCTTAAACC    194
                     ||||.||.||..|.||||||||.||||| ||| ||.||.|||||.||.||
RBAM_015570__    146 TCTACGGAACGCTGCAAAATAAAATCGC-CTTAGACTACATGCTGAAGCC    194

BSNT_02587___    195 GTTTATCAATAAGCCTCAAAAGGTAAAGCCGTGGGTGATTCAGCTTCTTC    244
                     .||||||...|||||..|.||.||.|||.|.||||||||||||||.||||
RBAM_015570__    195 TTTTATCCGCAAGCCGAATAAAGTGAAGTCATGGGTGATTCAGCTGCTTC    244

BSNT_02587___    245 GCCTATCCTTATATCAAATGGAGTATTTAGAGAAGATTCCAGACAGGGCA    294
                     |.||.|||...||||||||||||||||||||.||.||.||.||..|.||.
RBAM_015570__    245 GTCTGTCCGCGTATCAAATGGAGTATTTAGAAAAAATACCGGATCGCGCC    294

BSNT_02587___    295 GCCATTCATGAAGCGGTTGAGATTGCTAAAATCCGCGGACACAAAGGCAT    344
                     |||||||||||||||||||||||.||.||||..|||||.||.||.|||||
RBAM_015570__    295 GCCATTCATGAAGCGGTTGAGATCGCCAAAAAACGCGGGCATAAGGGCAT    344

BSNT_02587___    345 TGCTTCATTTGTCAACGGCGTGCTCCGTTCTATTCAGCGCGAAGGTGTTC    394
                     |||.||.||||||||||||.|.|||||.||..|.|||||.||||||||.|
RBAM_015570__    345 TGCGTCCTTTGTCAACGGCATCCTCCGCTCCCTGCAGCGTGAAGGTGTGC    394

BSNT_02587___    395 CATCCTTTGACGCGATCGAAGATCCTGTACGCCGGCTGGCGACAGAAACA    444
                     |.||.||.|..|..||.|||||.||.||.|.|||.||..|.|||||.|||
RBAM_015570__    395 CGTCATTCGCTGAAATTGAAGACCCGGTTCTCCGTCTTTCCACAGAGACA    444

BSNT_02587___    445 AGCCATCCGGAGTGGCTTGTGAAAGAGTGGGCGGATGCGTATGGATTTGA    494
                     ||||||||.||||||||.||.||||||||||..||.|||||.||.|||||
RBAM_015570__    445 AGCCATCCCGAGTGGCTCGTAAAAGAGTGGGTCGAGGCGTACGGCTTTGA    494

BSNT_02587___    495 AGCTGCGGAAAAGATTTGCCGCATCCATCTCATTCCGCCGAAGCAGACGC    544
                     .||.||.||||||||.|||||.||.|||||||||||||||||||||||||
RBAM_015570__    495 GGCAGCTGAAAAGATCTGCCGGATTCATCTCATTCCGCCGAAGCAGACGC    544

BSNT_02587___    545 TGCGTGTCAATCAAATGAA-AGCAGACAGAGCTGAGCTGCTTGACCAAAT    593
                     |.|||||||||||.||.|| ||| |||||.|               |||.
RBAM_015570__    545 TCCGTGTCAATCACATAAAGAGC-GACAGGG---------------AAAC    578

BSNT_02587___    594 GGCTGCTGA--------GGGAA--------TCGAAGTTGAAAAAGGCGAC    627
                     || ||||||        |.|||        |.||||.||||...||.|||
RBAM_015570__    579 GG-TGCTGAATGAGATGGAGAATGCCGGTCTTGAAGCTGAAGCCGGAGAC    627

BSNT_02587___    628 CTCGCTGAAGATGCTGTGAAGCTCTTAAAGGGAACAATTGCCGGAAC---    674
                     ||..||...|||||..|.|||||.|||||.||||..||.||  ||||   
RBAM_015570__    628 CTTTCTCCTGATGCGATTAAGCTTTTAAAAGGAAGCATCGC--GAACACG    675

BSNT_02587___    675 TCATTTCTTCCAAAACGGCGAAGTTTCCATCCAGGATGAGAGCTCCATGC    724
                     .||||| ||||||||||||...||.|||||.||||||||.|||||.||||
RBAM_015570__    676 GCATTT-TTCCAAAACGGCCGGGTATCCATACAGGATGAAAGCTCAATGC    724

BSNT_02587___    725 TCGTCGCCCGCGCCCTTGACCCTAAGCCTGATGAAACAGTGCTTGACGCG    774
                     |.|||||.||.||.||.|||||.|||||.|..|||||.||..|.|||||.
RBAM_015570__    725 TTGTCGCGCGGGCGCTGGACCCGAAGCCGGGCGAAACCGTTTTAGACGCA    774

BSNT_02587___    775 TGTGCGGCGCCTGGCGGAAAGTCGGCTCATATCGCAGAATTAATGCAGAA    824
                     ||.||.||.||.|||||||||||||||||.||.||.|||.|.|||.||||
RBAM_015570__    775 TGCGCCGCACCGGGCGGAAAGTCGGCTCACATTGCGGAACTGATGGAGAA    824

BSNT_02587___    825 CAAGGGGAGCGTTACGTCGCTTGATCTTCACAAACATAAAGTGAAGCTGA    874
                     |.||||||||.|.||.|||||||||||||||...||||||||||||||||
RBAM_015570__    825 CGAGGGGAGCCTCACATCGCTTGATCTTCACCGCCATAAAGTGAAGCTGA    874

BSNT_02587___    875 TCAAAGAAGCGGCAGACCGGCTTGGCCTGACAATCATTCATGCGGAAACA    924
                     |.|||||.|..|||||.|||||.||.||.||.|||||..|.|||.||||.
RBAM_015570__    875 TTAAAGAGGGCGCAGAACGGCTCGGGCTTACGATCATCGACGCGCAAACG    924

BSNT_02587___    925 ATGGATGCTAGAAAAGCGGGGGAAACGTTTG----AAAACGAACAGTTTG    970
                     ||||||||..||||||||||.||..|.||||    |    ||||.|||||
RBAM_015570__    925 ATGGATGCGCGAAAAGCGGGAGAGGCCTTTGGCGCA----GAACGGTTTG    970

BSNT_02587___    971 ACCGAATATTGGTCGATGCCCCGTGCTCAGGTTTCGGTGTTATCAGAAGA   1020
                     ||||..|..|.||.||||||||.||||||||||||||.||.|||||||||
RBAM_015570__    971 ACCGTGTTCTCGTTGATGCCCCTTGCTCAGGTTTCGGCGTCATCAGAAGA   1020

BSNT_02587___   1021 AAGCCGGACATGAAATACACGAAAAAGCCTGACGACAGCGCCCGTCTAGC   1070
                     ||.||.||.||||||||.|||||.|.|||.||.||||||...||.||..|
RBAM_015570__   1021 AAACCCGATATGAAATATACGAAGACGCCGGAGGACAGCAGACGGCTGTC   1070

BSNT_02587___   1071 TGAAATCCAGCTGTCG--ATCCTGAGGGAAATCGCACCATTAGTAAAAAA   1118
                     .||||||||||  |||  ||..|.|||||||||||.||||||||||||||
RBAM_015570__   1071 AGAAATCCAGC--TCGGCATTTTAAGGGAAATCGCCCCATTAGTAAAAAA   1118

BSNT_02587___   1119 AGGTGGCACTCTTGTCTACAGTACGTGTACAATGGACCGGACAGAAAATG   1168
                     |||||||||.||.||.||||||||||||||||||||||||||||||||||
RBAM_015570__   1119 AGGTGGCACACTCGTATACAGTACGTGTACAATGGACCGGACAGAAAATG   1168

BSNT_02587___   1169 ATGAAGTAATACATGCGTTTATACAAGAACATCCTGATTTTGAACCCGAT   1218
                     |.|||||.||.||||||||||||||||||||.|||||.||||||||||||
RBAM_015570__   1169 AAGAAGTTATGCATGCGTTTATACAAGAACACCCTGAGTTTGAACCCGAT   1218

BSNT_02587___   1219 TTGTCTCTTGAAAAGCGGCTGCCTGAAAAGGTGAGACCCTTTGTTCGGGA   1268
                     |||||||||||||||||||||||||||||||.||||||||||||||.|||
RBAM_015570__   1219 TTGTCTCTTGAAAAGCGGCTGCCTGAAAAGGCGAGACCCTTTGTTCAGGA   1268

BSNT_02587___   1269 TGGAAGGCTTCAGATCCTTCCTCATTATTTCGGAACAGATGGTTTCTTTA   1318
                     ||||||.|||||.||.|||||.|||||||||||||||||.||||||||||
RBAM_015570__   1269 TGGAAGCCTTCAAATTCTTCCGCATTATTTCGGAACAGACGGTTTCTTTA   1318

BSNT_02587___   1319 TTTGCAGCATGAGAAAGAAGGGATAA   1344
                     ||.|||||||||||||||||||||||
RBAM_015570__   1319 TTAGCAGCATGAGAAAGAAGGGATAA   1344


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