Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02598 and RBAM_015670

See Amino acid alignment / Visit BSNT_02598 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:27
# Commandline: needle
#    -asequence dna-align/BSNT_02598___yloV.1.9828.seq
#    -bsequence dna-align/RBAM_015670___yloV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02598___yloV-RBAM_015670___yloV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02598___yloV-RBAM_015670___yloV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02598___yloV
# 2: RBAM_015670___yloV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1697
# Identity:    1262/1697 (74.4%)
# Similarity:  1262/1697 (74.4%)
# Gaps:          64/1697 ( 3.8%)
# Score: 4613.5
# 
#
#=======================================

BSNT_02598___      1 TTGTCTATCAGAACATTAAACGGCAGAACCTTTGCCGAGATGATTCTTGC     50
                     |||||||...|||..|||.|.||.|||.|.|||||.|..||||||||.||
RBAM_015670__      1 TTGTCTAGACGAAACTTAGATGGGAGAGCTTTTGCGGCAATGATTCTGGC     50

BSNT_02598___     51 GGGAGCGCAGA-ATCTGTCTCAAAACGCCAGTGCAGTTGATGCACTGAAC     99
                     |||.||..||| || |||||||||||||....||.||.|||||.||||||
RBAM_015670__     51 GGGGGCTGAGACAT-TGTCTCAAAACGCATCCGCGGTGGATGCGCTGAAC     99

BSNT_02598___    100 GTGTTTCCGGTGCCGGACGGTGATACGGGAACAAATATGAACCTGTCGAT    149
                     ||||||||.|||||.|||||.|||||.||||||||||||||..|.|||||
RBAM_015670__    100 GTGTTTCCCGTGCCTGACGGCGATACCGGAACAAATATGAATTTATCGAT    149

BSNT_02598___    150 GACTTCCGGAGCAAGAGAAGTTGAACAAATGGATACGGATGATATCGGGA    199
                     |.|.|||||.||||||||.||.||.||.||.||..|....||.|||||.|
RBAM_015670__    150 GTCATCCGGTGCAAGAGAGGTAGAGCACATTGACTCACCCGACATCGGCA    199

BSNT_02598___    200 AGGTGGGTTCCGCGTTATCTAAAGGGCTGCTCATGGGAGCACGCGGAAAT    249
                     |.||.||...|||..|.||.|||||.|||||.|||||.||..|.|||||.
RBAM_015670__    200 AAGTCGGCATCGCCCTGTCAAAAGGCCTGCTTATGGGGGCGAGAGGAAAC    249

BSNT_02598___    250 TCAGGAGTTATCCTATCCCAATTGTTCCGCGGATTTAGCAAA-AGCATTG    298
                     |||||.||.|||.|.||||||||||||.|.|| |||..|||| |||||||
RBAM_015670__    250 TCAGGGGTGATCTTGTCCCAATTGTTCAGAGG-TTTCACAAAGAGCATTG    298

BSNT_02598___    299 AAACGAAAAAAGAAATTAATGCACTTGAGTTTGCCGCTGCGCTGCAAGCA    348
                     |||..|||||..||||..|.||.|..||.||||||||.||.||.|||||.
RBAM_015670__    299 AAAACAAAAACCAAATAGACGCCCAAGAATTTGCCGCAGCACTCCAAGCG    348

BSNT_02598___    349 GGTGTAGACATGGCGTATAAAGCTGTCATGAAACCTGTAGAGGGCACCAT    398
                     ||.||.||.|||||.|||||.||.|||||||||||.||.||.||.||.||
RBAM_015670__    349 GGAGTGGATATGGCATATAAGGCGGTCATGAAACCGGTTGAAGGAACGAT    398

BSNT_02598___    399 TTTAACAGTTGCAAAAGACGCTGCAAAAAAAGCGATGATCTTAGCAGAAA    448
                     ||||||.||.||.||.||.||.||.|||||||||.|...||..||..||.
RBAM_015670__    399 TTTAACCGTGGCCAAGGATGCGGCTAAAAAAGCGGTCGCCTCGGCCAAAG    448

BSNT_02598___    449 AAGAAACCGATATCACTGCGCTGATGATTGCAGTGACAGAAGAAGCAGAG    498
                     |||||||||||||.|.|.||.|.|||...||.||.|..||||||||.||.
RBAM_015670__    449 AAGAAACCGATATTATTTCGGTCATGGAGGCCGTTATTGAAGAAGCGGAA    498

BSNT_02598___    499 GCGTCTTTAAACCGCACCCCTGAATTGCTACCTGTCCTAAAGGAAGTAGG    548
                     |||||..|.||||||||.||.||..||||.|||||..|||||||.||.||
RBAM_015670__    499 GCGTCGCTGAACCGCACGCCGGATCTGCTTCCTGTTTTAAAGGACGTCGG    548

BSNT_02598___    549 AGTTGTCGATAGCGGGGGCAAAGGCCTGCTCTGTGTGTATGAAGGTTTCC    598
                     .||.||.||.|||||.||.|||||.|||||.|||||.||||||||.||..
RBAM_015670__    549 TGTCGTTGACAGCGGCGGAAAAGGTCTGCTTTGTGTATATGAAGGCTTTT    598

BSNT_02598___    599 TTGCTTCATTAAAAGGTGAAACTGTACCTCAGAAAGCAGTTCTTCCGTCA    648
                     |.|||.|.||||||||.||..|||||||..|.|||||.|||||||||.||
RBAM_015670__    599 TGGCTGCTTTAAAAGGAGAGGCTGTACCGAAAAAAGCGGTTCTTCCGGCA    648

BSNT_02598___    649 CTTGACGACATGGTCAGCGCAGAGCATCACAAGAGCGCGCAAAGCATGAT    698
                     ||.||.||.|||||.|..||.||||||||.||.||||||||.||||||.|
RBAM_015670__    649 CTCGATGATATGGTGAATGCCGAGCATCATAAAAGCGCGCAGAGCATGCT    698

BSNT_02598___    699 GAATACCGAAGATATTGAATTTGGATTCTGTACCGAAGTGATGGTTAGGC    748
                     ||.|||.|||||.||||||||.|||||.|||||.|||||||||||.||||
RBAM_015670__    699 GAGTACAGAAGACATTGAATTCGGATTTTGTACGGAAGTGATGGTGAGGC    748

BSNT_02598___    749 TTGATC-AGACAAAAAGAGAGTTCGACGAAGGCACGTTCAGGCAAGACCT    797
                     |.|||| |||.|||..|| .||||.|.||||..||||||||..|.||.||
RBAM_015670__    749 TGGATCAAGATAAACGGA-CGTTCAAGGAAGAGACGTTCAGAAACGAACT    797

BSNT_02598___    798 CAGCCAGTTCGGAGATTCTCTGCTTGTGATTGCGGATGAATCGCTGGCGA    847
                     .||||..|||||.|||||..||||.||..|.||.|||||..|||||||||
RBAM_015670__    798 GAGCCGTTTCGGCGATTCATTGCTGGTCGTGGCTGATGATACGCTGGCGA    847

BSNT_02598___    848 AGGTTCATATTCATGCTGAAGAGCCGGGAAACGT-GTTAAACTACGCCCA    896
                     |.||||||||||||||.|||||.||.||.||||| .|.||.|| |||.||
RBAM_015670__    848 AAGTTCATATTCATGCCGAAGAACCAGGGAACGTACTCAATCT-CGCACA    896

BSNT_02598___    897 GCATTACGGTGAATTGATCAAAATAAAAATAGAAAATATGAGAGAACAGC    946
                     ||.||||||.||.|||||.|||||.|||||.|||||.|||||.|||||||
RBAM_015670__    897 GCGTTACGGCGATTTGATTAAAATTAAAATTGAAAACATGAGGGAACAGC    946

BSNT_02598___    947 ATACCTCTATCATCAGTCAA---------GAAAGCAAACCTGCAGAC---    984
                     ||||.||.||||||||.|||         ||||..||.|||||.|.|   
RBAM_015670__    947 ATACTTCAATCATCAGCCAAGAACATGATGAAAAAAAGCCTGCCGGCGTT    996

BSNT_02598___    985 ---AACGAAATACCGCCGGCAAAGCAGCCGTATGGCATTGTGACTGTGGC   1031
                        ||.|||     |||.|||    ||||.|.||||||.|||||||||||
RBAM_015670__    997 ATGAAAGAA-----GCCCGCA----AGCCTTTTGGCATCGTGACTGTGGC   1037

BSNT_02598___   1032 GATGGGAGAAGGAATTTCAGACCTATTCAAAAGCATTGGCGCTTCTGTTG   1081
                     .||||||||.||.|||||.||..|.||.|..|||||.||||||||....|
RBAM_015670__   1038 AATGGGAGAGGGCATTTCTGAATTGTTTACGAGCATCGGCGCTTCACACG   1087

BSNT_02598___   1082 TGATTGAAGGCGGCCAGACCATGAACCCAAGCACTGAGGATATTGTTGAT   1131
                     |.||.||||||||||||||.|||||.||.|||||.||.|||||||||||.
RBAM_015670__   1088 TAATCGAAGGCGGCCAGACAATGAATCCGAGCACGGAAGATATTGTTGAA   1137

BSNT_02598___   1132 GCCGTGAAGTCTGTAAATGCAGATACGGTATTTATCCTGCCTAACAACTC   1181
                     |||.|..|||||||.|||||.||.|||||.||.||.||.||.|||||.||
RBAM_015670__   1138 GCCATTCAGTCTGTCAATGCGGAGACGGTTTTCATTCTTCCGAACAATTC   1187

BSNT_02598___   1182 CAACATTATCATGGCTGCTAACCAAGCGGCCAGCGTAGTGGATGAACAGG   1231
                     |||.|||.|.||||||||.||.||.|||||.|||||.|..||.|||.|.|
RBAM_015670__   1188 CAATATTGTGATGGCTGCCAATCAGGCGGCGAGCGTGGCTGAAGAAAATG   1237

BSNT_02598___   1232 TTTTTGTCATTCCTGCTAAAACGGTTCCGCAAGGGATGTCAGCCCTGCTG   1281
                     |..||||||||||.||.||||||||.||.|||||.|||.|.||||||||.
RBAM_015670__   1238 TCATTGTCATTCCGGCAAAAACGGTCCCTCAAGGCATGACTGCCCTGCTT   1287

BSNT_02598___   1282 GCTTTTAACCCGGATCAAGAAGCTGAAGCGAACGAGGCCAATATGC-TAA   1330
                     ||.||||||||.||.||....|||||.|..||.||.||.||||||| |.|
RBAM_015670__   1288 GCGTTTAACCCTGACCAGCCGGCTGATGTAAATGAAGCTAATATGCTTGA   1337

BSNT_02598___   1331 GCGCCATTCAGCAAGTAAAAAGCGGACAGGTGACGTTCTCAGTCAGAGAT   1380
                     | |||||.|.|.|.||.|||||||||||||||||.|..|||||||||||.
RBAM_015670__   1338 G-GCCATCCGGAATGTGAAAAGCGGACAGGTGACATATTCAGTCAGAGAC   1386

BSNT_02598___   1381 ACTCATATTGACGGTAAAGATATTAAAAAAGGCGACTTTATGGGCATTCT   1430
                     ||.|||||.|||||.|||||||||||||||||.||.|||||.||||||.|
RBAM_015670__   1387 ACCCATATCGACGGCAAAGATATTAAAAAAGGTGATTTTATCGGCATTTT   1436

BSNT_02598___   1431 GAATGGAACGATTATCGGCACTTCTGAAAATCAGCT--GTCAGCCGCGAA   1478
                     .||..|..|.||||||||||...|.|||.|||.|.|  ||  ||.|||||
RBAM_015670__   1437 AAACAGTTCAATTATCGGCAGCGCCGAAGATCGGATAAGT--GCGGCGAA   1484

BSNT_02598___   1479 AATGCTGCTGTCAGAAATGATCGGAGAAGATGATGAAATCGTGACCATTC   1528
                     |.||||||||...|||||||||||.||.||.|||||||||||.|||||.|
RBAM_015670__   1485 ATTGCTGCTGGATGAAATGATCGGGGATGAAGATGAAATCGTCACCATCC   1534

BSNT_02598___   1529 TATATGGTGAGGATGCGTCTCAGGAAGAAGCTGAGCAGCTTG--------   1570
                     |.||.||.|||||.|||.|..|.||||||||||||.|.||.|        
RBAM_015670__   1535 TGTACGGAGAGGACGCGCCGGAAGAAGAAGCTGAGAAACTCGCTGAGTAT   1584

BSNT_02598___   1571 -----AAGCGTTTCTCAGTGAAAAGTACGAGGAGATTGAGGTTGAGATCC   1615
                          |||||    ||.|||||         ||.||.||||||||.||||
RBAM_015670__   1585 ATTGCAAGCG----TCTGTGAA---------GATATCGAGGTTGAAATCC   1621

BSNT_02598___   1616 ACAATGGGAAACAGCCTCTGTATTCGTATATAGTTTCAGCAGAATAG   1662
                     |.||.||.|.|||||||||||||.|.||||||.||.|.|||||||||
RBAM_015670__   1622 ATAACGGCAGACAGCCTCTGTATCCATATATATTTGCGGCAGAATAG   1668


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.