Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02626 and RBAM_015900

See Amino acid alignment / Visit BSNT_02626 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_02626___ylqG.1.9828.seq
#    -bsequence dna-align/RBAM_015900___ylqG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02626___ylqG-RBAM_015900___ylqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02626___ylqG-RBAM_015900___ylqG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02626___ylqG
# 2: RBAM_015900___ylqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1959
# Identity:    1131/1959 (57.7%)
# Similarity:  1131/1959 (57.7%)
# Gaps:         483/1959 (24.7%)
# Score: 2922.0
# 
#
#=======================================

BSNT_02626___      1 ATGAACATA-----CGAAATGATGTGCAAAAGGCGCTGCAGCACCTTTTC     45
                     |||||||||     |||||     |.|||..|||            ||||
RBAM_015900__      1 ATGAACATAAGCGGCGAAA-----TCCAAGCGGC------------TTTC     33

BSNT_02626___     46 GGGCGTACAGCCG----------TCCCGCAGGAAACATCAAAA-----GT     80
                     .|    |||||.|          ||||.|.|| |.|..|||.|     ||
RBAM_015900__     34 AG----ACAGCTGACGGCGGAAATCCCTCCGG-ACCGGCAAGACGGCGGT     78

BSNT_02626___     81 AAA-----CGAAGCGCTAAACGGGGAGAAGCGTCTCCTCTTAGGAAAAGT    125
                     |||     ||  |||||.||.||          ||.||.|||||.||.||
RBAM_015900__     79 AAAGACAGCG--GCGCTCAAAGG----------CTGCTGTTAGGGAAGGT    116

BSNT_02626___    126 GCTTCGTTTACTAGGA-GATC--AGCATGCCCTGATCCAAGTCGGCAATC    172
                     .||.|||||.|| ||| ||||  |||  ||.||.||||||.|||||...|
RBAM_015900__    117 TCTCCGTTTGCT-GGACGATCAAAGC--GCTCTTATCCAAATCGGCGGCC    163

BSNT_02626___    173 AAACTGTTCAGGGAAAACTTGAAACCCAGCTTCGTCCTCAGGCATACTAT    222
                     ..||..|.||||||||||||||||||...||||||||.|||||.||.||.
RBAM_015900__    164 GGACGATGCAGGGAAAACTTGAAACCGCCCTTCGTCCGCAGGCGTATTAC    213

BSNT_02626___    223 TGGTTTTCCTACGAAAAAAAAACGGCAGAGCAAACAGGCCGTCTTCAGG-    271
                     ||||||||.||.||.|||.|..||||.||..||||.|||||.|||||.| 
RBAM_015900__    214 TGGTTTTCTTATGACAAACAGCCGGCGGAAAAAACGGGCCGGCTTCATGT    263

BSNT_02626___    272 --TCGTTCAAAGCTTTGATCAAAATCCTAAAACCATTCAGGATGCAGCTG    319
                       |||..|||   ||.||...|||.||.||||||.|||||||.||.|| |
RBAM_015900__    264 CATCGACCAA---TTCGAAGGAAACCCGAAAACCGTTCAGGAAGCGGC-G    309

BSNT_02626___    320 GCAAG-CTTTTAAATGCCATGTCAGTGAAGACGTCAAACGCAG-------    361
                     |.||| ||.|||||.||..|.||        .||||||| |||       
RBAM_015900__    310 GGAAGACTGTTAAACGCTCTTTC--------TGTCAAAC-CAGGCCCTGT    350

BSNT_02626___    362 --CTCT-CATGAT----GA-------------CAGGAGCGATGCTGAAGA    391
                       |||| || |||    ||             |||.|||  |||.||.||
RBAM_015900__    351 GTCTCTGCA-GATTGCCGAAACGTTTATGCAGCAGAAGC--TGCCGATGA    397

BSNT_02626___    392 -GCAAAACACCCGTAACAGAAAATGATATCAAAACAGCT---GTCCGCTG    437
                      |.||||||.||                ||||   ||||   .|||||||
RBAM_015900__    398 CGGAAAACAGCC----------------TCAA---AGCTTGCATCCGCTG    428

BSNT_02626___    438 GATGGACACGCT----GCCTTCGCAA--GACACAAAAAAAGCAGTTGAAA    481
                     |...||..||||    |||..|| ||  |     ||||||||.|..||||
RBAM_015900__    429 GGCTGAATCGCTTCCGGCCGCCG-AATTG-----AAAAAAGCGGCGGAAA    472

BSNT_02626___    482 CGGTTCTCTTCGCTTTAAAGCGTGATCTTCCCATTCAC-TCCGAGA--TT    528
                     |..|..|.||.||..|.||.||.||.||.|||  .||| |||| ||  |.
RBAM_015900__    473 CAATCGTATTTGCGCTGAAACGGGAACTGCCC--GCACATCCG-GAAGTC    519

BSNT_02626___    529 TTGAATGGTGTTCACGCTGTGAAATCGCCTGTTCCGTTGCATCAGCACGT    578
                     |||...|...||||.||.||.||||..||.||||||    |.|.| .||.
RBAM_015900__    520 TTGTCAGCCATTCATGCCGTTAAATATCCGGTTCCG----ACCCG-GCGC    564

BSNT_02626___    579 ATCC---CAG--CTGCTACAGGCAATCGACCAAAACCCTCAGCAGA--GC    621
                     .|||   |||  |||.|.|||||||||.|.|   |..|||.||| |  |.
RBAM_015900__    565 CTCCTCTCAGGACTGTTTCAGGCAATCAATC---AGGCTCCGCA-ATCGG    610

BSNT_02626___    622 CAAATGA--TGTCAAAGCTAAAGGAAGCAGTT----ACGGTGCTTTTAAA    665
                     ||||.||  ||||...|||.||.|..||.|||    |||    |.|||||
RBAM_015900__    611 CAAAAGAGCTGTCTGTGCTCAAAGCGGCGGTTTCTGACG----TGTTAAA    656

BSNT_02626___    666 TAGTGAAATCGATGTCCATGCAGAACGGCTAATTGATAAGCTTATTTCTT    715
                     ....||||..|||.|.|||||||||||.||..|..|.||||||       
RBAM_015900__    657 CGCGGAAACGGATCTTCATGCAGAACGTCTCCTGAAGAAGCTT-------    699

BSNT_02626___    716 TAACCGA--CAATACGAAAGCACCTTCT------CCGGCGAATACAGCTG    757
                       .||||  |...|||.|.|| |..|||      ||||        ||||
RBAM_015900__    700 --GCCGAGGCTGCACGCATGC-CGCTCTCAGAAACCGG--------GCTG    738

BSNT_02626___    758 ------GAAGCAG-------GGAGCTTAGCA-------CACCAGCTGGCT    787
                           ||||.||       |||    |.||       |||||..||  |
RBAM_015900__    739 ATGGATGAAGGAGAACGGACGGA----ATCAAAACAATCACCATTTG--T    782

BSNT_02626___    788 CC--------------CCCGGAA----------AAGCCAGCCT-----GC    808
                     ||              ..|||||          ||||||||||     .|
RBAM_015900__    783 CCGAGAGACTCGTGAAAACGGAAAGGCAGTCTCAAGCCAGCCTTCTCCTC    832

BSNT_02626___    809 CGATTGCAAATCACACAGCAGAACAGGGAA--GCATACAAGAAGAGCTTG    856
                     |||.||||   |.||||    ||...||||  ||.|..||.||..||   
RBAM_015900__    833 CGAGTGCA---CGCACA----AATCCGGAACTGCCTGAAAAAACGGC---    872

BSNT_02626___    857 TTAAAACAG----CAGCAGACATTCCAATTAAAGAAGCCCGCCAGCTGCT    902
                       |||||||    .|| |||      ||||||                  
RBAM_015900__    873 --AAAACAGATTATAG-AGA------AATTAA------------------    895

BSNT_02626___    903 GGTGAAGCTGACGGAATCTGCTGAAA------AAAACAGTCTCCAAATTG    946
                             ||||   |||.||.||||      |||||.|||.|      |
RBAM_015900__    896 --------TGAC---ATCGGCAGAAAAAACTGAAAACCGTCCC------G    928

BSNT_02626___    947 TGAAAGAAGCAGC--AAATTGGATTAAAGCGGCTGCTTCATCGGGT----    990
                     |.||||.|.|.||  |.||  .|||||   ||||  |||||    |    
RBAM_015900__    929 TAAAAGTAACGGCGGAGAT--CATTAA---GGCT--TTCAT----TTCTC    967

BSNT_02626___    991 --GATAGTAAGTCAC-TTG----CAGCTTCAGCTGTTTTACAAGCGGCAC   1033
                       ||.|  ||   || |||    |||   ||.|||||.|.|||...||||
RBAM_015900__    968 AAGAAA--AA---ACATTGAAAACAG---CACCTGTTCTTCAAAACGCAC   1009

BSNT_02626___   1034 AAGTCACAGACCAGGAAGCCGAAGTCTTTTT----AAAGGCTGTTCAGCA   1079
                     |..|.|||||.|||||.||    |.||.|||    |||.||.|.||||| 
RBAM_015900__   1010 ATCTGACAGAACAGGAGGC----GGCTGTTTTCGAAAAAGCCGCTCAGC-   1054

BSNT_02626___   1080 GACAGCACCCCATTTGGCGGATA-AGGCAG------ATGTTCTTT-----   1117
                         .||||..|||     ||.| |.||||      |||.|.|.|     
RBAM_015900__   1055 ----TCACCGAATT-----GAAATATGCAGAAAAACATGATGTATTAAGC   1095

BSNT_02626___   1118 CTTTCTTATCC--AAAGTGAAAACGGCAATCGGCGCAAGGGACGAGGTTG   1165
                     ||||    |.|  |||.|.||||..|.|.|.|||.|..|.||.||..|..
RBAM_015900__   1096 CTTT----TGCAGAAAATCAAAAAAGGACTGGGCACGCGTGATGAATTAT   1141

BSNT_02626___   1166 CGTTCATTAAAGCGTTTGAACAAGGAAGCGCAGT---CACATCTGGCGAA   1212
                     |.|||||||.|||..|||||.|||   |||.| |   |.||.|.||.|||
RBAM_015900__   1142 CATTCATTACAGCACTTGAAAAAG---GCGTA-TCTCCTCAGCCGGAGAA   1187

BSNT_02626___   1213 A-------TG----CAATCCATCAAGCTGGCTCTTTCTGCCTTAAGA-GC   1250
                     |       ||    ||..||..|||||.|      ||.|      || ||
RBAM_015900__   1188 ACAAGCGCTGAAAACAGCCCTCCAAGCCG------TCCG------GACGC   1225

BSNT_02626___   1251 ATCGCATGAGGTAGCCGAACCAGTCAAACAAGAAGCCGATCAGCTTTTTC   1300
                     .|  ||.||||...||.||.|.||.||||||||.||.||.|.||||.|||
RBAM_015900__   1226 TT--CAAGAGGCGCCCCAATCCGTTAAACAAGAGGCGGAACCGCTTATTC   1273

BSNT_02626___   1301 ATAAATTAAATGGCCAGCTTTTCATGCAGCAGGACCATCCATCATACAGC   1350
                     ||||||||||.||||||||.||.||..|||||.|..|.||.||.|..|..
RBAM_015900__   1274 ATAAATTAAACGGCCAGCTGTTTATTGAGCAGCATAACCCTTCTTTTACG   1323

BSNT_02626___   1351 CAAATTGTAATGTCATTTCCGATGTTTTCGAA--GTCAGGGGTTCAG---   1395
                     ||.||.||..|||||||||||.||     |.|  |||.|.|..|.||   
RBAM_015900__   1324 CAGATGGTGCTGTCATTTCCGCTG-----GGAGCGTCCGCGTATGAGAAT   1368

BSNT_02626___   1396 GACATGACTGTTCTGTTTAAAGGAAAGAAAGAAG-CGGATGGAAAGCTTG   1444
                     |||||.||.|||||.|||||||| |.|.|||||| ||||.|||||.||.|
RBAM_015900__   1369 GACATCACAGTTCTCTTTAAAGG-ACGGAAGAAGCCGGACGGAAAACTCG   1417

BSNT_02626___   1445 ATCCTTCCCATTGCCGCCTTTTGTTTTTGCTGCAGCTTGATACACTAAAA   1494
                     ||||.||.||||||.|.||..|||||||||||||.|||||.|||||..||
RBAM_015900__   1418 ATCCGTCACATTGCAGGCTCCTGTTTTTGCTGCACCTTGAAACACTGCAA   1467

BSNT_02626___   1495 GAAACCGTCGTTGATTGCTTGGTACAACAAAAAGTCATGACCATTACAAT   1544
                     ||||||||.||.||.|||.||.|.||.|||||.||.|||||||||||..|
RBAM_015900__   1468 GAAACCGTTGTGGACTGCATGATTCAGCAAAATGTAATGACCATTACGGT   1517

BSNT_02626___   1545 AGAGACTGATTTCGAGCTGCAGGCTGCGATCGATCCGATGGTGCCCGCGC   1594
                     .|||||||||||.|||||.|||||.||.|||||.||..|.||.||  .||
RBAM_015900__   1518 TGAGACTGATTTTGAGCTTCAGGCCGCCATCGACCCTCTCGTACC--GGC   1565

BSNT_02626___   1595 TTAAACAGGGGC--TAAAGGAAATGGGGTACAGCCTTTCAGGGGTAAACG   1642
                     ||.||.||..||  ||||.||||.|||.|.||||||.|||||.||.|..|
RBAM_015900__   1566 TTTAAAAGAAGCCGTAAAAGAAACGGGCTTCAGCCTGTCAGGCGTCACGG   1615

BSNT_02626___   1643 CTAAAAAAAGGGTTCACACCG-AAGA--AAAGGCTTCAATC-----GATC   1684
                     ||||||||.||   |.| ||| ||||  |.||    ||.||     ||..
RBAM_015900__   1616 CTAAAAAACGG---CGC-CCGAAAGACCAGAG----CACTCTTGTGGAAG   1657

BSNT_02626___   1685 AATATATA-------AC-----AAGTATCAGTGATCAGGAAGTGGATGTG   1722
                     |.|.||||       ||     |||.|            |||||||||||
RBAM_015900__   1658 AGTTTATAGAAAAAGACGGCGGAAGAA------------AAGTGGATGTG   1695

BSNT_02626___   1723 AAAATATGA   1731
                     |||||||||
RBAM_015900__   1696 AAAATATGA   1704


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.