Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02646 and RBAM_016060

See Amino acid alignment / Visit BSNT_02646 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_02646.1.9828.seq
#    -bsequence dna-align/RBAM_016060___fliH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02646-RBAM_016060___fliH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02646-RBAM_016060___fliH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02646
# 2: RBAM_016060___fliH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 768
# Identity:     450/768 (58.6%)
# Similarity:   450/768 (58.6%)
# Gaps:         156/768 (20.3%)
# Score: 1473.0
# 
#
#=======================================

BSNT_02646         1 TTGTCTAATATCATTAAACAAGAATCATCTATTTCTCCACAAAAGGAAAA     50
                                                                       
RBAM_016060__      0 --------------------------------------------------      0

BSNT_02646        51 AAGAAAACTTTCTATACAAGAGGTGCGTATTGATCATTCTCACCTTTTGC    100
                                                                       
RBAM_016060__      0 --------------------------------------------------      0

BSNT_02646       101 AGGCTGAAGAGAACTCGGAGGCGCTTATGGC-----CCGAGTGAAAGAGG    145
                                               |||||     ||     ||||..|
RBAM_016060__      1 --------------------------ATGGCTTTTGCC-----AAAGCAG     19

BSNT_02646       146 AAGCTGACCGGATTTCTGAGCAGGCAAACAGTCATATAGAAAATATTCGC    195
                     ||||.|||.||.|.|||||..|.||.||.|.|||..|.||..|.|.||..
RBAM_016060__     20 AAGCCGACAGGGTGTCTGAAGAAGCGAAAAATCAATTTGAGCACACTCTT     69

BSNT_02646       196 CGTCAAATCGAGCAGGAGAAAAACGATTGGGCGGCTGAAAAACAGAAGCT    245
                     ||.||.||.||..|.|||||||||...|||||||..|||||||| |||.|
RBAM_016060__     70 CGGCAGATTGAAGAAGAGAAAAACCGCTGGGCGGAAGAAAAACA-AAGAT    118

BSNT_02646       246 T-ATTGAAGAAGCAAAAACCGAGGGCTTTGAACAAGGAGTAGCGTTGGGC    294
                     | ||.|||||||||||..|.||.||.|.||||.||||..|.||.|||||.
RBAM_016060__    119 TGATAGAAGAAGCAAAGGCAGAAGGATATGAAGAAGGCATGGCATTGGGA    168

BSNT_02646       295 AAAGCTGAGGCATTGCAA---CAGTATGCCGAACTGATCGGCCAAGCGAA    341
                     |||||.|||||   .|||   .|.||.|||.|.||.|||.|||..||.||
RBAM_016060__    169 AAAGCCGAGGC---TCAAGCTGAATACGCCAATCTCATCAGCCGGGCCAA    215

BSNT_02646       342 ---CAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAG    388
                        |..|||   .||||||.|.|||.|..|.||.|||||.||.||.|||.
RBAM_016060__    216 TGCCGTTAT---GGAAATGGCGAGACAGTCAGTCGAGGAAAAACTGGAAA    262

BSNT_02646       389 ACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTT    438
                     .||||.|.|||||||||.||||||||.|||||||.||.||.||||||||.
RBAM_016060__    263 GCGCTGAGGAAGAAATCATTGAGCTTTCCGTTGCGCTCGCTAAAAAAGTA    312

BSNT_02646       439 TGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACA    488
                     ||||.||||||...||||||||||||||||||.||.|||||.||..||||
RBAM_016060__    313 TGGCGGCAAAAAAGTGATGATAAAGAGGCTTTTCTTCTGCTGGTCAAACA    362

BSNT_02646       489 GGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATC    538
                     |||..||..||||||.||.||.|||||.||.||.||.||.|||||.||.|
RBAM_016060__    363 GGTAGTAGCCGAAGTAAAAGATTATGATGACATCTCCATCTATGTGGACC    412

BSNT_02646       539 CATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCCAGCAGCTT    588
                     |..|.||.||||.|||..|...||||||.|..||.|||||.||||||||.
RBAM_016060__    413 CTGAATATTATGTGACGGTTCATCAGCATATGGACGAAATTCAGCAGCTG    462

BSNT_02646       589 CTTTATAAAGAATGCCGGCTTGGCATATATGCTGATGAAAAAGCTCAAAA    638
                     .|.||.|||||||||.|..|..||.|||||||.|||||||||||....||
RBAM_016060__    463 TTATACAAAGAATGCAGATTAAGCTTATATGCCGATGAAAAAGCCGCGAA    512

BSNT_02646       639 AGGAACCTGTTATATTGAAACTCCTTTTGGCAGGGTAGATGCGAGTGTTG    688
                     .|||||.||.|..||.||||||||.||.||..|.||.|||||..|..|.|
RBAM_016060__    513 GGGAACGTGCTCGATAGAAACTCCGTTCGGACGTGTTGATGCAGGCATAG    562

BSNT_02646       689 ACACACAATTGATGCAATTGAAAG-ATAAACTTCTGACAGCGCTGGAAGC    737
                     ||||.||..|||||||||| |||| |.||||||.|.||.|||||.||.||
RBAM_016060__    563 ACACCCAGCTGATGCAATT-AAAGCAAAAACTTTTAACGGCGCTTGAGGC    611

BSNT_02646       738 AGGTGC--AGCTGAATGA    753
                     .||.||  |||  |||||
RBAM_016060__    612 GGGAGCGGAGC--AATGA    627


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