Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02673 and RBAM_016240
See
Amino acid alignment /
Visit
BSNT_02673 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02673___flhF.1.9828.seq
# -bsequence dna-align/RBAM_016240___flhF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02673___flhF-RBAM_016240___flhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02673___flhF-RBAM_016240___flhF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02673___flhF
# 2: RBAM_016240___flhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1159
# Identity: 776/1159 (67.0%)
# Similarity: 776/1159 (67.0%)
# Gaps: 125/1159 (10.8%)
# Score: 2453.0
#
#
#=======================================
BSNT_02673___ 1 ATGAAAATAAAAAAATTTACTGCTGCTTCAATGCAAGAAGCTGCACTTCT 50
||||||||||||||||||||.||.|||||||||||.||.||.||....|.
RBAM_016240__ 1 ATGAAAATAAAAAAATTTACAGCCGCTTCAATGCAGGATGCCGCGAAGCA 50
BSNT_02673___ 51 CATCAGAAAAGAGTTAGGTAATGAAGCGGTCATATTAAATTCAAAAAAAA 100
.||||.|||.||..|.||.|||||.||.||.||.|||.||||.|||.||.
RBAM_016240__ 51 AATCAAAAAGGAACTCGGCAATGATGCCGTTATTTTACATTCCAAACAAG 100
BSNT_02673___ 101 TTAAAAAGCGAAAATGGTTTGGCC-----TCATCAACAAGCCTGCTGTTG 145
|.||.||.|||||||||.|.||.| || .||.||.||| ||.|
RBAM_016240__ 101 TAAAGAAACGAAAATGGCTGGGGCTGCGGTC-GCAGCAGGCC----GTCG 145
BSNT_02673___ 146 AAGTAATCGCCGTATTGGATCAGGACTTTCTTGA---GAAAAAAACGCCT 192
||||.||.||.||.||.||||..|||.|....|| ||.|||||||||.
RBAM_016240__ 146 AAGTGATAGCGGTTTTAGATCGTGACGTCAGGGAAGCGAGAAAAACGCCG 195
BSNT_02673___ 193 CAGAAGGCAGCTGAACCGAAACAAACATTAAAAACTCCGGTCAGCAGTCC 242
|.|...||.|||||| ||| ||.||||| ..|
RBAM_016240__ 196 CCGGCTGCCGCTGAA--GAA------ATGAAAAA-------------GAC 224
BSNT_02673___ 243 GAAAATAGAGGAGA-----GAACAT----ATCCCCC------------TC 271
|.|||..|.||||| ||.|.| |.||.|| ||
RBAM_016240__ 225 GGAAACGGCGGAGAAAGCTGAGCCTGTTCAGCCGCCACGTCTTCCGGATC 274
BSNT_02673___ 272 AAA----TTCCGGCGCAACAGGAGCTAGGTGATTTTTCAGCATATCAATC 317
||| |||||||| |||.||.|| |||||..||.|
RBAM_016240__ 275 AAAGCATTTCCGGCG-AACTGGCGC------ATTTTAAAGAA-------- 309
BSNT_02673___ 318 TGTACTTCCTGAGCCGCTGCGAAAAGCAGAAAAGCTTTTGCAAGAAA--C 365
||.||.|||||.||..|...||||||.||.|..||.||| |||.|| |
RBAM_016240__ 310 -GTGCTCCCTGAACCATTAAAAAAAGCCGAGAGACTATTG-AAGCAAGCC 357
BSNT_02673___ 366 AGG------GATCAAAGAGTCTACG-AAAACGAAC---ACTC--TGAAAA 403
.|| ||||| |||| |||||| | |||| ||
RBAM_016240__ 358 GGGCTTCCTGATCA-------TACGCAAAACG--CCGTACTCAGTG---- 394
BSNT_02673___ 404 AATTGCTTCGCTTC-TCTGTTGAAGCAGGCGGCTTGACTGAAGAAAATGT 452
|||||||.|| ||| ||..|||...|.||.|..||.||||||||.||
RBAM_016240__ 395 AATTGCTCCG-TTCTTCAATTGTTTCCGGAGATTTAACTGAAGATAA--- 440
BSNT_02673___ 453 TGTCGGC---AAACTTCAGGAAATACTA-TGCGATACGCTGCCCGCAGCA 498
||||.|| |||||.|||||..|..|| || .|.|..||.||..|.|||
RBAM_016240__ 441 TGTCAGCTCAAAACTGCAGGATTTGTTAGTG-AAAAAACTCCCTTCGGCA 489
BSNT_02673___ 499 GACAAGTGGCAGGAGCCAATTCATTCAAAATATATCGTTCTCTTTGGTTC 548
||||.|||||||||....|||||.||||||||..||||.||.||.|||||
RBAM_016240__ 490 GACAGGTGGCAGGAAGGGATTCAATCAAAATACGTCGTGCTTTTCGGTTC 539
BSNT_02673___ 549 AACAGGGGCTGGTAAAACAACTACACTGGCTAAACTCGCAGCCATATCTA 598
|||.|||||.||.|||||.||||||||.||.||||||||.|||..|||.|
RBAM_016240__ 540 AACCGGGGCCGGCAAAACGACTACACTTGCGAAACTCGCGGCCTCATCAA 589
BSNT_02673___ 599 TGCTTGA-AAAACATAAAAAAATCGCTTTTATTACAACAGATACGTATCG 647
||| ||| |.|.|||||||||||.||.|||||.||.||.|||||.||.||
RBAM_016240__ 590 TGC-TGACAGAGCATAAAAAAATTGCCTTTATGACGACGGATACTTACCG 638
BSNT_02673___ 648 TATTGCAGCTGTTGAACAGTTGAAAACATACGCTGAACTGCTGCAGGCTC 697
.|||||.||.||.||.|||.||||.|||||.||.||.|||||.|||||||
RBAM_016240__ 639 GATTGCCGCGGTCGAGCAGCTGAAGACATATGCGGAGCTGCTTCAGGCTC 688
BSNT_02673___ 698 CTCTGGAAGTTTGCTATACAAAAGAAGAATTTCAGCAGGCGAAGGAGTTA 747
||||.|||||.||||||.||||.|||||||.||.|.||||...|||...|
RBAM_016240__ 689 CTCTTGAAGTATGCTATTCAAAGGAAGAATGTCTGAAGGCACTGGAAAAA 738
BSNT_02673___ 748 TTTTCTGAGTATGATCATGTGTTTGTTGATACAGCCGGAAGAAACTTCAA 797
||..||||.|||||.|||||.||..|||||||||||||.||||||||.||
RBAM_016240__ 739 TTCGCTGAATATGACCATGTTTTCATTGATACAGCCGGTAGAAACTTTAA 788
BSNT_02673___ 798 GGACCCGCAATACATTGATGAACTGAAAGAAACGATTCCTTTTGAGAGCA 847
.||...|||.||.|||...|||.|..||||.|.||||||.||||| |.||
RBAM_016240__ 789 AGAAGAGCAGTATATTACGGAATTACAAGAGATGATTCCGTTTGA-ATCA 837
BSNT_02673___ 848 -GCATTCAGTCATTTCTTGTTTTATCCGCGACTGCAAAATATGAAGATAT 896
||.|.||.||.|||||.||.|||||.||..|||||||||||||||||||
RBAM_016240__ 838 GGCTTACAATCCTTTCTCGTATTATCGGCATCTGCAAAATATGAAGATAT 887
BSNT_02673___ 897 GAAGCATATTG----TCAAACGGTTTTCATCCGTCCCTGTCAATCAGTAT 942
|||.|| | |.||||.|||||||...||.||.||||||||.|..
RBAM_016240__ 888 GAAACA----GGGGCTGAAACAGTTTTCAGGTGTGCCGGTCAATCAATTC 933
BSNT_02673___ 943 ATTTTTACGAAAATAGATGAAACGACTTCCTTAGGTTCTGTATTTAATAT 992
|||||.|||||||..||||||||..|.||..|.||.||.||.|||.|..|
RBAM_016240__ 934 ATTTTCACGAAAACGGATGAAACCGCCTCACTCGGCTCCGTGTTTCAAGT 983
BSNT_02673___ 993 ACTGGCAGAATCAAAAATAGGTGTCGGGTTTATGACAAACGGACAGAATG 1042
.|||.|.|||||||.|||.||.|.||..|.|.|||||||.||||||.|||
RBAM_016240__ 984 GCTGTCGGAATCAAGAATCGGCGCCGCCTATTTGACAAATGGACAGGATG 1033
BSNT_02673___ 1043 TGCCTGAGGATATACAGACTGTATCTCCACTTGGTTTTGTGAGGATGCTG 1092
|||||||.||.||.|...|.|..||.|||...|..|||||.||||||||.
RBAM_016240__ 1034 TGCCTGAAGACATCCTATCGGCTTCACCAAAAGAGTTTGTAAGGATGCTT 1083
BSNT_02673___ 1093 TGCAGATGA 1101
|..|.||||
RBAM_016240__ 1084 TTGACATGA 1092
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.