Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_02675 and RBAM_016250

See Amino acid alignment / Visit BSNT_02675 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_02675___ylxH.1.9828.seq
#    -bsequence dna-align/RBAM_016250___ylxH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02675___ylxH-RBAM_016250___ylxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02675___ylxH-RBAM_016250___ylxH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02675___ylxH
# 2: RBAM_016250___ylxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity:     642/945 (67.9%)
# Similarity:   642/945 (67.9%)
# Gaps:         105/945 (11.1%)
# Score: 2102.5
# 
#
#=======================================

BSNT_02675___      1 ATGAA--CAGATATGACCAAGCAGCAACTTTACGGGCGAAAATG-GAAAA     47
                     |||||  |.|||     ||.||||...|.|||.|...||||||| ||   
RBAM_016250__      1 ATGAAACCCGAT-----CAGGCAGAGTCATTAAGAAGGAAAATGAGA---     42

BSNT_02675___     48 ACGTGAGCGCGTTCTGCCAAT------------GGTTTATTCACAAAAAG     85
                         |||||      ||.|||            |.|||||....||||||
RBAM_016250__     43 ----GAGCG------GCAAATGATCAAGCCGGAGCTTTATGAGAAAAAAG     82

BSNT_02675___     86 CGAAGACACTTGCTGTCATCAGCGGCAAGGGCGGTGTCGGAAAATCCAAT    135
                     ||||||||.|.||.|||||||||||.||.|||||.|||||||||||.|||
RBAM_016250__     83 CGAAGACATTAGCCGTCATCAGCGGTAAAGGCGGCGTCGGAAAATCTAAT    132

BSNT_02675___    136 ATTACCTTAAATATGGCACTTGCGCTCCAGGATAAAGGTAAGAAGGTGCT    185
                     .|.||.|||||.||||||.||||.||.|||||.|||||.||.||.|..||
RBAM_016250__    133 TTAACATTAAACATGGCAGTTGCCCTGCAGGAAAAAGGAAAAAAAGCACT    182

BSNT_02675___    186 GCTCATCGACCTTGATATCGGGATGGGGAACATTGATATATTAATAGGAA    235
                     ..||||.||.|||||.|||||.|||||.|||||||||.|..|.||.||..
RBAM_016250__    183 CATCATTGATCTTGACATCGGAATGGGCAACATTGATGTGCTGATCGGCG    232

BSNT_02675___    236 ATTCATCGTCTGCCACGATAATTGATGTTTT----AACCGATCGTAAGCC    281
                     .|.|.||.||...|||.||.||||||||..|    ||.||   |.|.||.
RBAM_016250__    233 CTGCTTCTTCCCGCACCATTATTGATGTGATGGAGAATCG---GCACGCA    279

BSNT_02675___    282 TTTGCTCCAGTCATTATCCATTGG-CCCAAAGGGTTTGCGGTATATATCA    330
                     ||.||| ||.|||.|.|||...|| ||.|||||..|| ||.||.|||||.
RBAM_016250__    280 TTGGCT-CAATCACTTTCCTCCGGTCCGAAAGGCCTT-CGCTACATATCC    327

BSNT_02675___    331 GGGGGAACCGGTCTTGATGTGATGTTTC-AGCTCGATCAGAGA-AAATGG    378
                     ||.|||||.||.|||||.|.|||.|.|| ||| .|| |||||| ||.|||
RBAM_016250__    328 GGAGGAACGGGGCTTGAGGCGATCTATCAAGC-AGA-CAGAGAGAAGTGG    375

BSNT_02675___    379 ACG--TTTTTTGCCAATGAACTTTCTCATGCATTAAGCCAGTTCGATTAT    426
                     .||  ||||.||  ||||..|||||...||.|||||||.|.||.|||||.
RBAM_016250__    376 TCGGCTTTTATG--AATGGTCTTTCCGCTGTATTAAGCGATTTTGATTAC    423

BSNT_02675___    427 GTGCTGTTTGATATGGGAGCGGGTTTATCAAAAGATCAACTGCCTTTTAT    476
                     ||.||||||||||||||||||||..|.||||||||.||.|||||.|||||
RBAM_016250__    424 GTTCTGTTTGATATGGGAGCGGGACTTTCAAAAGAACAGCTGCCGTTTAT    473

BSNT_02675___    477 TTTATCAGCAGAAGATATTTTGATTATAACAACTCCCGAGCCGACGGCCA    526
                     ||||||.||.|||||.|||.|...|.|.|||||.||.|||||||||||||
RBAM_016250__    474 TTTATCGGCGGAAGACATTCTCGCTGTGACAACGCCTGAGCCGACGGCCA    523

BSNT_02675___    527 TTTTGGACGCATACAGCGCTGTCAAGCA-CTT--------GGTT------    561
                     ||.||||.||.||||||||..||||.|| |||        ||.|      
RBAM_016250__    524 TTATGGATGCCTACAGCGCGATCAAACATCTTTTGCTCGCGGATGAACGG    573

BSNT_02675___    562 TTGACAGAAAATAAGCTTTCAATGAAGGTGGCTGTCAATCGGTGCCGTGA    611
                     .||||.|.|||.|               |.||.||||||||...|||.|.
RBAM_016250__    574 CTGACCGTAAACA---------------TTGCCGTCAATCGCGCCCGCGC    608

BSNT_02675___    612 CCAAAAGGAAGGGCTTGACGCTTTTGCCCGCCTCTCCCGTACAATTCATA    661
                     .|||||..|.|.|||.|||.|.|....||||||.||.|.|.|.|||||.|
RBAM_016250__    609 TCAAAAACAGGCGCTGGACACGTACAACCGCCTTTCTCATGCGATTCACA    658

BSNT_02675___    662 TGTTTTTGGATGTTCA--GGTTCAGTTT-GCCGGTTCCGTTTCTGACGAT    708
                     .||||||  |.|..||  |||.| |||| |||||.|||.|..|.||.||.
RBAM_016250__    659 CGTTTTT--AGGCGCAGGGGTGC-GTTTCGCCGGCTCCATACCCGATGAC    705

BSNT_02675___    709 GTGATCGTGAGCAAAGCGGTTGTCGAACAGGTTCCTTTTTTCATAAAAAG    758
                     ..|.|.||.||..||||.||..|.||.|||||.||||||||.||||||||
RBAM_016250__    706 CCGCTAGTAAGTCAAGCCGTCATTGACCAGGTGCCTTTTTTAATAAAAAG    755

BSNT_02675___    759 CCCTCAGGCAAAAGCCAGCCGGTCAGTCCGTATTTTAGCGGACGCCTTGT    808
                     .|||||.||||||||||||.||||.||||||.||.|..||||.|.|||||
RBAM_016250__    756 TCCTCAAGCAAAAGCCAGCAGGTCCGTCCGTCTTCTGACGGATGTCTTGT    805

BSNT_02675___    809 TT-----GGAAGAGAAGAAACGAGACACAA-AGAAGACAAACAGACATTT    852
                     ||     ||||||.||.||||      ||| ||||||.||||.|.|||||
RBAM_016250__    806 TTCAAACGGAAGAAAACAAAC------CAAGAGAAGAGAAACCGGCATTT    849

BSNT_02675___    853 ATTGAGAAATTATCTTCTTTTTTAATGAGGAGGGCTTAA------    891
                     |||||||.||||||||||||||||.||||||||.|||.|      
RBAM_016250__    850 ATTGAGAGATTATCTTCTTTTTTATTGAGGAGGACTTTACAGTGA    894


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02675 and RBAM_016250

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
