Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02681 and RBAM_016290

See Amino acid alignment / Visit BSNT_02681 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_02681.1.9828.seq
#    -bsequence dna-align/RBAM_016290___cheC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02681-RBAM_016290___cheC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02681-RBAM_016290___cheC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02681
# 2: RBAM_016290___cheC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity:     238/630 (37.8%)
# Similarity:   238/630 (37.8%)
# Gaps:         330/630 (52.4%)
# Score: 942.0
# 
#
#=======================================

BSNT_02681         0 --------------------------------------------------      0
                                                                       
RBAM_016290__      1 ATGAGTAAGTTTAAAGCGATCAAAGAAGAGCAGATGGATATTTTGCGGGA     50

BSNT_02681         0 --------------------------------------------------      0
                                                                       
RBAM_016290__     51 AGTCGGAAATATCGGGGCGGGTCACTCGGCTTCTGCAATGGCTCAGCTGC    100

BSNT_02681         0 --------------------------------------------------      0
                                                                       
RBAM_016290__    101 TGAACAGAAAGATAGACATGGAAGTGCCGTTTGCGACTTTATTGACATTT    150

BSNT_02681         0 --------------------------------------------------      0
                                                                       
RBAM_016290__    151 GATGAGCTCGCTGATTTTTTCGGCGGGGCTGAAACGCCGGTCGCCAGTAT    200

BSNT_02681         0 --------------------------------------------------      0
                                                                       
RBAM_016290__    201 CTTTTTAAGAATGGAAGGCGACATGACCGGCTCTATCTTTCTCATCATGC    250

BSNT_02681         0 --------------------------------------------------      0
                                                                       
RBAM_016290__    251 CTTTTGATCAAGCGGAACAGTTTATCAGAGAGCTGATCGGAAATCCGGAT    300

BSNT_02681         1 ------------------------------ATGAGCTCATCCGCTTTGCA     20
                                                   .||||.||.||.|||||.||
RBAM_016290__    301 TTTGATATTGACCAGTTGGGCGAAGATCATTTGAGTTCTTCTGCTTTACA    350

BSNT_02681        21 TGAACTGGGCAATATTTTAGCGGGGTCATATTTAACAGCTTTGGCGGATT     70
                     |||..|.||||||||||||||.||.||.||||||||.||.|||||.||||
RBAM_016290__    351 TGAGTTCGGCAATATTTTAGCAGGTTCCTATTTAACGGCATTGGCTGATT    400

BSNT_02681        71 TGACGAAACTCCAGCTCTATCCAAGTGTTCCTGAAGTCTCTTTGGACATG    120
                     ||||.||.||..||.|.||.||.||.||.||.|||.||||..|.||.|||
RBAM_016290__    401 TGACAAAGCTTGAGATTTACCCGAGCGTGCCGGAAATCTCACTTGATATG    450

BSNT_02681       121 TTCGGAGCAGTGATCAGCGAAGGGCTGATGGAGCTCAGTCAGGTTGGAGA    170
                     |||||.||.||.|||||.||||||||||||||||||||.||.||.|||||
RBAM_016290__    451 TTCGGCGCGGTTATCAGTGAAGGGCTGATGGAGCTCAGCCAAGTCGGAGA    500

BSNT_02681       171 ACACGCCATTGTTGTCGACACGTCAATTTTTGACCAAAGCCATCAGCAGG    220
                     .||.||||||||.||.||.||.||.|||||||||||..||...|.|||||
RBAM_016290__    501 GCATGCCATTGTCGTGGATACTTCTATTTTTGACCAGGGCAGCCGGCAGG    550

BSNT_02681       221 AGCTGAAAGCGCATATGTTTATGCTGCCGGACTATGATTCATTTGAAAAG    270
                     ||||.|||||.||.|||||||||||.||||||||||||||.|||||||||
RBAM_016290__    551 AGCTCAAAGCCCACATGTTTATGCTCCCGGACTATGATTCTTTTGAAAAG    600

BSNT_02681       271 CTCTTTGTCGCCTTAGGTGCATCATTATGA    300
                     |||||.|||.|.||.|||||..|.||||||
RBAM_016290__    601 CTCTTCGTCTCATTGGGTGCGGCTTTATGA    630


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