Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02682 and RBAM_016300

See Amino acid alignment / Visit BSNT_02682 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_02682___cheD.1.9828.seq
#    -bsequence dna-align/RBAM_016300___cheD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02682___cheD-RBAM_016300___cheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02682___cheD-RBAM_016300___cheD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02682___cheD
# 2: RBAM_016300___cheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 514
# Identity:     404/514 (78.6%)
# Similarity:   404/514 (78.6%)
# Gaps:          26/514 ( 5.1%)
# Score: 1585.5
# 
#
#=======================================

BSNT_02682___      1 ATGAGTACAACTGAG--------GCTGTTGTTATAAAGGTTGGGATTGCT     42
                     |||||     |.|.|        ||.||.|||   ||.||.||||||||.
RBAM_016300__      1 ATGAG-----CCGTGCGGAAGCCGCAGTCGTT---AAAGTGGGGATTGCG     42

BSNT_02682___     43 GACG-TGAAGATCGCCCGCTTCCCGGATACCATCCGGACCTCTGGTTTGG     91
                     ||.| |.||| ||||.||.|.||||||||..|||||||||||.||..|.|
RBAM_016300__     43 GATGTTCAAG-TCGCGCGTTACCCGGATAAAATCCGGACCTCGGGACTCG     91

BSNT_02682___     92 GCTCATGTGTGGGGCTGGTGCTTTAT--GATAAAGAAAAGCAAACGGCGG    139
                     |.|||||.|||||||||||  |||||  ||||||||.||.||||||||.|
RBAM_016300__     92 GTTCATGCGTGGGGCTGGT--TTTATACGATAAAGACAAACAAACGGCAG    139

BSNT_02682___    140 GTCTTGTTCATGTCATGCTTCCGGATTCGACG--TTATCGAAAACTGCCG    187
                     |.||.|||||.||||||||.|||||.||  ||  |||||.|||||.||.|
RBAM_016300__    140 GACTCGTTCACGTCATGCTGCCGGACTC--CGGTTTATCAAAAACGGCGG    187

BSNT_02682___    188 AGCTCAACCGGGCTAAGTACGCTGACACCGCCGTACAGACCACGATTGAT    237
                     ||||||||||.||.||.|||||.|||||||||||..|||..|||||||||
RBAM_016300__    188 AGCTCAACCGTGCAAAATACGCGGACACCGCCGTTAAGATGACGATTGAT    237

BSNT_02682___    238 ATGCTGATAGAAGCGGGATGCCGGAAATTTGCATTAAAAGCAAAGCTGGC    287
                     |||||..|..||||.||.|||||.||.|||||.||.||.|||||.||.||
RBAM_016300__    238 ATGCTTTTGAAAGCCGGCTGCCGCAAGTTTGCCTTGAAGGCAAAACTCGC    287

BSNT_02682___    288 CGGCGGATCAGAGATGTTTAAATTTAAATCGACAAATGATTTGATGAAGA    337
                     |||.|||.|.|||||||||||.||||||..||||||.||..|||||||.|
RBAM_016300__    288 CGGGGGAGCGGAGATGTTTAAGTTTAAAATGACAAACGACCTGATGAAAA    337

BSNT_02682___    338 TCGGACCGAGAAATGTATTAGCGATAAAAGAACAGCTGTCTTTATTTAAT    387
                     ||||.|||||.||||||...||.||.|||||.|||||.||.||.|.|||.
RBAM_016300__    338 TCGGTCCGAGGAATGTAGCGGCCATCAAAGAGCAGCTTTCATTGTATAAC    387

BSNT_02682___    388 ATTCCTATTATTAGTGAAGATACGGGCGGCTCAAGCGGCCGGACGATAGA    437
                     |||||..|.||.|||||||||||||||||||||||||||||||||||.||
RBAM_016300__    388 ATTCCGGTCATCAGTGAAGATACGGGCGGCTCAAGCGGCCGGACGATTGA    437

BSNT_02682___    438 ATTTGAACCGAAGTCCTGCATGCTGCATATTCGAACTGTTAAACAAGGTG    487
                     ||||||.||.|||||||||||||||||.||||||||||||||||||||||
RBAM_016300__    438 ATTTGAGCCAAAGTCCTGCATGCTGCACATTCGAACTGTTAAACAAGGTG    487

BSNT_02682___    488 AAAAAACGATTTAA    501
                     |||.||||||||||
RBAM_016300__    488 AAACAACGATTTAA    501


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.