Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02711 and RBAM_016550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_02711___mlpA.1.9828.seq
# -bsequence dna-align/RBAM_016550___mlpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02711___mlpA-RBAM_016550___mlpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02711___mlpA-RBAM_016550___mlpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02711___mlpA
# 2: RBAM_016550___mlpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1248
# Identity: 982/1248 (78.7%)
# Similarity: 982/1248 (78.7%)
# Gaps: 30/1248 ( 2.4%)
# Score: 3827.5
#
#
#=======================================
BSNT_02711___ 1 TTGATTAAACGATATACGTGTCAAAATGGTGTAAGAATTGTGCTGGAAAA 50
|||||.|||||.|||||.||.|||||.|||||||||.|||||||.|||||
RBAM_016550__ 1 TTGATAAAACGCTATACATGCCAAAACGGTGTAAGAGTTGTGCTTGAAAA 50
BSNT_02711___ 51 TAACCCGACAGTCCGTTCTGTTGCGATCGGCGTATGGATCGGCACAGGTT 100
|||.||.||.||.||.|||||.||.||||||||.||||||||.||.||.|
RBAM_016550__ 51 TAATCCAACGGTGCGGTCTGTGGCAATCGGCGTCTGGATCGGGACGGGAT 100
BSNT_02711___ 101 CGAGACATGAAACGCCGGAGATAAACGGAATTTCTCACTTTTTAGAGCAC 150
|..|.||||||||||||||.|.||||||.|||||.||||||.|.|||||.
RBAM_016550__ 101 CACGTCATGAAACGCCGGATACAAACGGTATTTCGCACTTTCTTGAGCAT 150
BSNT_02711___ 151 ATGTTCTTTAAAGGGACGAGCACAAAATCTGCACGCGAGATAGCAGAATC 200
|||||.||||||||.||.|..||.|..||.|||||.||.||.|||||.||
RBAM_016550__ 151 ATGTTTTTTAAAGGAACAAATACCAGGTCCGCACGTGAAATCGCAGAGTC 200
BSNT_02711___ 201 TTTTGATCGTATTGGCGGCCAGGTCAATGCGTTTACTTCAAAGGAATATA 250
.||.|||||.||.||||||||.||.|||||.||.||||||||.|||||||
RBAM_016550__ 201 CTTCGATCGGATAGGCGGCCAAGTGAATGCCTTCACTTCAAAAGAATATA 250
BSNT_02711___ 251 CCTGCTACTATGCAAAGGTGCTTGACGAGCATGCGAATTACGCGCTGGAC 300
|.|||||.||.||.||.|||||.||.||||||||.||.|||||.||.||.
RBAM_016550__ 251 CGTGCTATTACGCCAAAGTGCTGGATGAGCATGCAAACTACGCACTTGAT 300
BSNT_02711___ 301 GTATTAGCAGATATGTTCTTTCATTCAACGTTTGATGAAAACGAGCTGAA 350
||..|.||.|||||||||||||||||..|.|||||.|||.|.|||||.||
RBAM_016550__ 301 GTGCTGGCTGATATGTTCTTTCATTCTGCTTTTGACGAAGATGAGCTCAA 350
BSNT_02711___ 351 AAAAGAGAAAAATGTAGTATATGAAGAAATTAAAATGTATGAAGATGCGC 400
||||||.||.||.||.||||||||||||||.||||||||||||||.||||
RBAM_016550__ 351 AAAAGAAAAGAACGTCGTATATGAAGAAATCAAAATGTATGAAGACGCGC 400
BSNT_02711___ 401 CGGACGACATTGTACATGATTTATTGAGCAAAGCCACTTACGGCAATCAT 450
||||.||||||||.||.|||.|..||||||||||.||.||||||||||||
RBAM_016550__ 401 CGGATGACATTGTCCACGATCTGCTGAGCAAAGCGACATACGGCAATCAT 450
BSNT_02711___ 451 TCTTTAGGCTACCCAATTCTAGGCACGGAAGAAACGCTTGCTTCCTTTAA 500
||..|.||||||||.|||||.||.|||||.|||||||||.|.||.|||||
RBAM_016550__ 451 TCGCTCGGCTACCCGATTCTCGGGACGGAGGAAACGCTTTCGTCATTTAA 500
BSNT_02711___ 501 CGGTGACTCTCTCAGACAATACATGCATGATTATTATACGCCGGACCGAG 550
|||.||.|||||||||||..|.|||.||||.|.|||.|||||||||||.|
RBAM_016550__ 501 CGGCGATTCTCTCAGACAGCATATGGATGACTTTTACACGCCGGACCGCG 550
BSNT_02711___ 551 TGGTGATTTCGGTAGCGGGCAATATATCTG-ACAGTTTTATCAAAGATGT 599
|.||.|||||.||.||.||.|||.||.|.| ||| .||.||.|||||.||
RBAM_016550__ 551 TCGTCATTTCTGTCGCCGGAAATGTAACGGAACA-ATTCATTAAAGACGT 599
BSNT_02711___ 600 AGAAAAATGGTTCGGGTCATACGAGGCGAAAGGCAAAGCGACAGGCCTTG 649
.||.|||||||||||..|||||||.|||||.||||||||.|..|| |.|.
RBAM_016550__ 600 GGAGAAATGGTTCGGTACATACGAAGCGAAGGGCAAAGCAAGCGG-CATC 648
BSNT_02711___ 650 AG-AAGCCTGAGTTCCACACGGAAAAACTGACGAGAAAAAAAGAAACAGA 698
|| .||||||||||.||....|||||.|||||.|||||||||||.||.||
RBAM_016550__ 649 AGCGAGCCTGAGTTTCATTATGAAAAGCTGACCAGAAAAAAAGACACCGA 698
BSNT_02711___ 699 GCAGGCTCATTTGTGCCTTGGATTTAAAGGCTTAGAGGTTGGCCAT--GA 746
.|||||.|||.|.||.||.||.||.||||||.|..|.||.||..|| |.
RBAM_016550__ 699 ACAGGCGCATCTCTGTCTCGGTTTCAAAGGCCTGAAAGTCGGAGATCCGG 748
BSNT_02711___ 747 ACGTATTTATGATTTAATCGTCCTCAACAATGTGCTCGGAGGCAGCATGA 796
|| |||||.|||||.||||||.|.|||||.|||||.||.||.|||||||
RBAM_016550__ 749 AC--ATTTACGATTTGATCGTCTTAAACAACGTGCTGGGCGGAAGCATGA 796
BSNT_02711___ 797 GCAGCCGGCTGTTCCAAGATGTGCGTGAAGATAAAGGACTTGCTTATTCT 846
|||||||.||.|||||.||||||||.||||||||||||||.||.||||||
RBAM_016550__ 797 GCAGCCGTCTTTTCCAGGATGTGCGCGAAGATAAAGGACTGGCCTATTCT 846
BSNT_02711___ 847 GTTTACAGCTATCACAGCTCATATGAGGACAGCGGAATGCTCACTATTTA 896
||.||||||||||||||.||.|||||.||||||||.|||||.||.|||||
RBAM_016550__ 847 GTATACAGCTATCACAGTTCCTATGAAGACAGCGGTATGCTGACGATTTA 896
BSNT_02711___ 897 CGGTGGAACGGGTGCAAATCAGCTTCAG-CAGCTGTCGGAAACAATTCAA 945
|||.||.||.||.||.||||||| ||.| |..|||||.|||||.|||||.
RBAM_016550__ 897 CGGAGGCACCGGCGCGAATCAGC-TCGGACTTCTGTCTGAAACCATTCAG 945
BSNT_02711___ 946 GAAACCCTTGCCACAT------TAAAACGTGACGGCATTACCTCAAAAGA 989
|||||..| || |||||||||||||.||.|||.|.|||||
RBAM_016550__ 946 GAAACGTT------ATCGGTTCTAAAACGTGACGGTATCACCCCGAAAGA 989
BSNT_02711___ 990 ACTGGAAAACAGCAAAGAGCAAATGAAGGGAAGCTTAATGCTGAGCTTAG 1039
.|||||||||||||||||||||||||||||.|||||||||||.|||||||
RBAM_016550__ 990 GCTGGAAAACAGCAAAGAGCAAATGAAGGGGAGCTTAATGCTCAGCTTAG 1039
BSNT_02711___ 1040 AAAGCACAAACAGCAAAATGAGCCGAAACGGAAAAAATGAACTGCTGCTC 1089
|.|||||||||||||||||||||||.|||||.|||||.|||||.||||||
RBAM_016550__ 1040 AGAGCACAAACAGCAAAATGAGCCGGAACGGGAAAAACGAACTCCTGCTC 1089
BSNT_02711___ 1090 GGCAAACATAAAACATTAGATGAAATCATCAATGAATTAAACGCCGTGAA 1139
||.||.|||||.||..|.||||||||.||||.|||||||||.||.||.|.
RBAM_016550__ 1090 GGAAAGCATAAGACCATGGATGAAATTATCACTGAATTAAATGCGGTCAG 1139
BSNT_02711___ 1140 CTTAGAGCGTGTTAACGGCCT-TGCCAGACAATTGTTTACCGAAGACTAT 1188
|.|.||..|.||.|||||||| .||| |.|..||.|||||.||.||.||.
RBAM_016550__ 1140 CCTGGAAAGCGTCAACGGCCTCAGCC-GCCGCTTATTTACGGATGATTAC 1188
BSNT_02711___ 1189 GCATTAGCACTTATCAGCCCTTCCGGCAATATGC------CGTCTTAA 1230
|||.||.|.||.||||||||..|||||||||||| ||||||||
RBAM_016550__ 1189 GCACTATCGCTCATCAGCCCGACCGGCAATATGCCGGCCTCGTCTTAA 1236
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