Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02712 and RBAM_016560

See Amino acid alignment / Visit BSNT_02712 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_02712___ymxH.1.9828.seq
#    -bsequence dna-align/RBAM_016560___ymxH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02712___ymxH-RBAM_016560___ymxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02712___ymxH-RBAM_016560___ymxH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02712___ymxH
# 2: RBAM_016560___ymxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 261
# Identity:     209/261 (80.1%)
# Similarity:   209/261 (80.1%)
# Gaps:           6/261 ( 2.3%)
# Score: 829.5
# 
#
#=======================================

BSNT_02712___      1 ATGCGGCTCAGTGAATTATCAGGAAAGGAAATTGTAGACATCAAAAGAGC     50
                     |||.|||||||||||.|.|||||.||.||||||||.|||||.|||.|.||
RBAM_016560__      1 ATGAGGCTCAGTGAACTTTCAGGTAAAGAAATTGTGGACATTAAACGGGC     50

BSNT_02712___     51 TGAACGGCTCGGAGTGCTCGGCCAGACCGATTTGGAAATCAATGAACAGG    100
                     .||.||||||||.||||||||||||||||||||||||||.||||||||||
RBAM_016560__     51 AGAGCGGCTCGGCGTGCTCGGCCAGACCGATTTGGAAATTAATGAACAGG    100

BSNT_02712___    101 ATGGACAGATTACAGCACTCCTCATTCCCACAGTTAAGTGGTTTGGTTTG    150
                     |.|||||.||||||||.||..|.||.||.||.||.||.|||||.||.|||
RBAM_016560__    101 ACGGACAAATTACAGCGCTGTTGATACCGACGGTAAAATGGTTCGGATTG    150

BSNT_02712___    151 AGAAAGCAAGGTCATGACATTCGTGTCCCATGGCACCATATTCAAAAGAT    200
                     .||||.|||||.||.|||||.||.|||||.|||.|||||||.|||||.||
RBAM_016560__    151 CGAAAACAAGGCCACGACATCCGCGTCCCCTGGAACCATATCCAAAAAAT    200

BSNT_02712___    201 CGGTTCAGATATGATTATATTAGATGTACCTGAGGAAAT---GCCTCCTC    247
                     |||.|||||.|||||.||.|||||.||.||.|.|||.||   |||||| |
RBAM_016560__    201 CGGGTCAGACATGATCATTTTAGACGTTCCGGGGGAGATCACGCCTCC-C    249

BSNT_02712___    248 GACAAGAGTAA    258
                     |  |||||||.
RBAM_016560__    250 G--AAGAGTAG    258


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