Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02721 and RBAM_016610

See Amino acid alignment / Visit BSNT_02721 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence dna-align/BSNT_02721___dapA.1.9828.seq
#    -bsequence dna-align/RBAM_016610___dapA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02721___dapA-RBAM_016610___dapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02721___dapA-RBAM_016610___dapA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02721___dapA
# 2: RBAM_016610___dapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 874
# Identity:     729/874 (83.4%)
# Similarity:   729/874 (83.4%)
# Gaps:           5/874 ( 0.6%)
# Score: 3054.0
# 
#
#=======================================

BSNT_02721___      1 ATGAATTTCGGAAATGTGTCTACAGCGATGATTACACCCTTTGACAATAA     50
                     ||||||.||||||||.|.|||||||||||||||||.||||||||||.|||
RBAM_016610__      1 ATGAATGTCGGAAATATATCTACAGCGATGATTACCCCCTTTGACAGTAA     50

BSNT_02721___     51 AGGGAACGTAGACTTTCAAAAACTGTCTACACTGATTGATTACTTGTTGA    100
                     ||||||.||||||||||||||||||||||||.|.||.||.||.|||||||
RBAM_016610__     51 AGGGAATGTAGACTTTCAAAAACTGTCTACATTAATCGACTATTTGTTGA    100

BSNT_02721___    101 AAAACGGAACGGATTCTTTAGTAGTAGCGGGAACAACTGGAGAATCTCCG    150
                     |||||||.||||||||||||||.||.||.||.||.||.||.|||||||||
RBAM_016610__    101 AAAACGGCACGGATTCTTTAGTCGTCGCAGGCACGACCGGCGAATCTCCG    150

BSNT_02721___    151 ACCCTTTCAACTGAAGAAAAAATTGCGCTTTTTGAATATACAGTAAAAGA    200
                     ||.||||||||.||||||||||||||.||.|||||||.||||||.|||||
RBAM_016610__    151 ACACTTTCAACGGAAGAAAAAATTGCACTCTTTGAATTTACAGTCAAAGA    200

BSNT_02721___    201 AGTAAACGGACGGGTGCCCGTTATCGCTGGTACTGGAAGCAACAACACGA    250
                     |||.||||||||.|||||.|||||.||.|||||.|||||||||||.||||
RBAM_016610__    201 AGTGAACGGACGCGTGCCTGTTATTGCGGGTACGGGAAGCAACAATACGA    250

BSNT_02721___    251 AAGATTCCATTAAGCTGACAAAAAAAGCTGAGGAAGCGGGCGTGGA-CGC    299
                     ||||.||||||||.|||||||||||||||||.|||||.|||||.|| .||
RBAM_016610__    251 AAGACTCCATTAAACTGACAAAAAAAGCTGAAGAAGCCGGCGTCGATTGC    300

BSNT_02721___    300 TGTTATGCTTGTTACCCCGTATTACAATAAACCTTCTCAAGAAGGAATGT    349
                      |||||||||||.||.||||||||.|||||.|||||.|||||.||.||||
RBAM_016610__    301 -GTTATGCTTGTCACGCCGTATTATAATAAGCCTTCCCAAGAGGGGATGT    349

BSNT_02721___    350 ACCAGCATTTTAAAGCAATTGCGGCAGAGACATCTCTTCCGGTTATTCTC    399
                     |||..|||||||||||.|||||||.|||.||.||||||||.||.||.||.
RBAM_016610__    350 ACCGTCATTTTAAAGCCATTGCGGAAGAAACGTCTCTTCCTGTGATGCTT    399

BSNT_02721___    400 TATAATGTTCCTGGCCGTACGGTTGCTTCTCTTGCTCCTGAAACGACGAT    449
                     ||.||.||.||.|||.|.|||||.|||||.|||||.||.||||||.|.||
RBAM_016610__    400 TACAACGTGCCGGGCAGAACGGTCGCTTCGCTTGCGCCGGAAACGGCCAT    449

BSNT_02721___    450 CCGTTTGGCGGCAGACATTCCGAATGTGGTTGCGATTAAAGAAGCGAGCG    499
                     |.|..|.|||   ||.||.||||||.|...||||||||||||||||||||
RBAM_016610__    450 CAGACTTGCG---GAGATACCGAATATCTCTGCGATTAAAGAAGCGAGCG    496

BSNT_02721___    500 GAGACCTCGAAGCGATTACAAAAATTATTGCTGAAACACCTGAAGACTTC    549
                     |.||.||.||.||.|||||.|||||.|||||.||||||||.|||||.||.
RBAM_016610__    497 GCGATCTTGATGCCATTACGAAAATCATTGCCGAAACACCGGAAGATTTT    546

BSNT_02721___    550 TATGTCTATTCAGGGGATGATGCTCTGACGCTTCCAATTCTTTCAGTTGG    599
                     ||.|||||||||||.|||||.|...|.||||||||.|||||..||||.||
RBAM_016610__    547 TACGTCTATTCAGGTGATGACGGGTTAACGCTTCCTATTCTCGCAGTCGG    596

BSNT_02721___    600 AGGAAGAGGAGTTGTGTCAGTGGCGAGCCATATTGCAGGCACTGATATGC    649
                     .|||||||||||.|||||||||||.||||||||.|.|||..||||.||||
RBAM_016610__    597 CGGAAGAGGAGTCGTGTCAGTGGCCAGCCATATCGTAGGTTCTGACATGC    646

BSNT_02721___    650 AGCAAATGATCAAAAATTATACGAATGGGCAAACAGCTAATGCGGCACTG    699
                     ||||.|||||.|||||.||||||||.|||||.||.||.|..|||||||||
RBAM_016610__    647 AGCAGATGATTAAAAACTATACGAACGGGCAGACGGCAACCGCGGCACTG    696

BSNT_02721___    700 ATTCATCAGAAACTGCTGCCGATTATGAAGGAACTGTTTAAAGCGCCTAA    749
                     |||||||||||.||.||||||||.||||||||.||.||||||||||||||
RBAM_016610__    697 ATTCATCAGAAGCTTCTGCCGATCATGAAGGAGCTCTTTAAAGCGCCTAA    746

BSNT_02721___    750 TCCTGCTCCAGTCAAAACAGCGCTTCAGCTGAGAGGTCTTGATGTCGGTT    799
                     |||.|||||.||||||||.|||||.|||||||.|||.|||||||||||.|
RBAM_016610__    747 TCCGGCTCCGGTCAAAACGGCGCTACAGCTGAAAGGCCTTGATGTCGGAT    796

BSNT_02721___    800 CTGTGCGTCTGCCTCTAGTCCCGTTAACTGAGGATGAACGTCTGAGCTTA    849
                     ||||||||||.|||||..|||||.|.|.|||.|||||||||||||||.|.
RBAM_016610__    797 CTGTGCGTCTTCCTCTTATCCCGCTGAATGAAGATGAACGTCTGAGCCTG    846

BSNT_02721___    850 AGCAGCACGATCAGCGAACTGTAA    873
                     ||||||...|||||||||||||||
RBAM_016610__    847 AGCAGCGTCATCAGCGAACTGTAA    870


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