Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02728 and RBAM_016660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_02728___ymfC.1.9828.seq
# -bsequence dna-align/RBAM_016660___ymfC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02728___ymfC-RBAM_016660___ymfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02728___ymfC-RBAM_016660___ymfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02728___ymfC
# 2: RBAM_016660___ymfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 734
# Identity: 567/734 (77.2%)
# Similarity: 567/734 (77.2%)
# Gaps: 16/734 ( 2.2%)
# Score: 2147.0
#
#
#=======================================
BSNT_02728___ 1 ATGTCTACAAAAGCTGATAATCGGCACTTGTATTTGAAAGTAATTGAACG 50
|||||||||||||||||.|||||.|||||||||.|.|||||.|||||.||
RBAM_016660__ 1 ATGTCTACAAAAGCTGACAATCGTCACTTGTATCTAAAAGTGATTGAGCG 50
BSNT_02728___ 51 AATTAAAGAGGATATAAAAAATGGGATCTACACTGAGAAGGAAAAGCTGC 100
|||.||||||||||||.||||.||.||.|||||.||.|||||||||||.|
RBAM_016660__ 51 AATCAAAGAGGATATACAAAACGGAATTTACACCGAAAAGGAAAAGCTTC 100
BSNT_02728___ 101 CTTCTGAATTTGAGCTTTCCAAAAAGC--TTGGTGTCAGCAGAGCGACGC 148
||||||||||||||||||| ||||.| |.|||||||||.|.||.||.|
RBAM_016660__ 101 CTTCTGAATTTGAGCTTTC--AAAATCAATGGGTGTCAGCCGGGCAACTC 148
BSNT_02728___ 149 TAAGAGAAGCCTTGCGGATACTGGAAGAAGAGCATGTGATTATCAGAAGG 198
|..|.|||||.|||||.||.||.|||||.|||||||||||||||||||||
RBAM_016660__ 149 TGCGTGAAGCTTTGCGTATCCTTGAAGAGGAGCATGTGATTATCAGAAGG 198
BSNT_02728___ 199 CATGGTGTAGGCACTTTTGTCCATTCTAAGCCGTTATTTCTTTCGGGCAT 248
||.|||||.||||||||.||||||.|.||.|||.|.||||||||.||.||
RBAM_016660__ 199 CACGGTGTGGGCACTTTCGTCCATACAAAACCGCTGTTTCTTTCAGGTAT 248
BSNT_02728___ 249 TGAACAGCTGAACAGTGTAACCAAGATGATAGAACAGGCGAATATGACCC 298
|||||||||.|||||.||.||.||.|.|||..|.||||||||.|||...|
RBAM_016660__ 249 TGAACAGCTCAACAGCGTGACGAAAACGATTCAGCAGGCGAACATGGTGC 298
BSNT_02728___ 299 CTGGCACGATTTTTCTATCATCACAAGTGCTTATGCCGTCTGAAGATGAT 348
|.||.|||||||||.|.||.||.||.||..|.|.|||||||||.||.|||
RBAM_016660__ 299 CGGGTACGATTTTTTTGTCGTCTCAGGTCATCACGCCGTCTGATGAAGAT 348
BSNT_02728___ 349 A-CGAAGAGATTTCATTTGGCAGAA----GGGCAAGAACTTTTTTACCTT 393
| || ..|||||.| |||...| |.|||.||.||||||||..|.
RBAM_016660__ 349 ATCG-CTAGATTCC----GGCTTGAGCCTGAGCAGGAGCTTTTTTATTTG 393
BSNT_02728___ 394 GAACGAGTCAGGACAGCTGACGGACA-GCCGATTGTGTATTGTATAGACA 442
|||||.||.||.||.||...||| || .|||.|.||.||.|||.||||.|
RBAM_016660__ 394 GAACGCGTGAGAACGGCAAGCGG-CACTCCGGTCGTTTACTGTTTAGATA 442
BSNT_02728___ 443 AAATTCCGATGAATATTTTGCCGAATTCTTTTTCTCATCAGCAAGAATCT 492
..|||||||||.|.|||.|||||||||||||.|.||||.|.||.||||||
RBAM_016660__ 443 CGATTCCGATGCACATTCTGCCGAATTCTTTCTGTCATGAACAGGAATCT 492
BSNT_02728___ 493 ATGTTTGACCTTCTTGAGAAAAATTCAGGCTCCGTAATCAGCTATGCAGT 542
||.|||||.|||.|.||.|||||.||.||.||.||.|||||||||||.||
RBAM_016660__ 493 ATTTTTGATCTTTTGGAAAAAAACTCCGGGTCTGTGATCAGCTATGCCGT 542
BSNT_02728___ 543 AACTGATATAGAACCGATCGGCTATCACGATACCATTTCTCCAGTACTTG 592
..|||||||.|||||||||||.|||||||||||.|||||.||.||..|.|
RBAM_016660__ 543 TGCTGATATCGAACCGATCGGATATCACGATACGATTTCACCGGTTTTGG 592
BSNT_02728___ 593 AATGCGATCCGGAAACAGCCCTTTTGCTGTTAAAACAAACCCATTACGAT 642
|||||||.|||||.||.||.|||||..||.|.||.||||||||.||..||
RBAM_016660__ 593 AATGCGAGCCGGAGACGGCGCTTTTATTGCTGAAGCAAACCCACTATAAT 642
BSNT_02728___ 643 CAGCACGATAAACCGGTGCTTTATTCTTTAAATTATTTTAGAGCGGATAA 692
|||.|.|||.||||.|||||.|||||.|||||||||||..|.||.|||||
RBAM_016660__ 643 CAGAATGATGAACCTGTGCTGTATTCATTAAATTATTTCCGGGCTGATAA 692
BSNT_02728___ 693 ATTCAGATTTCATGTTTTGCGTAAACGATTCTAA 726
.|||||.|||||||||.|..|.|||||.||.|||
RBAM_016660__ 693 GTTCAGTTTTCATGTTGTAAGAAAACGTTTTTAA 726
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