Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02736 and RBAM_016740

See Amino acid alignment / Visit BSNT_02736 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:41
# Commandline: needle
#    -asequence dna-align/BSNT_02736.1.9828.seq
#    -bsequence dna-align/RBAM_016740.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02736-RBAM_016740.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02736-RBAM_016740.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02736
# 2: RBAM_016740
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity:     669/793 (84.4%)
# Similarity:   669/793 (84.4%)
# Gaps:           2/793 ( 0.3%)
# Score: 2837.0
# 
#
#=======================================

BSNT_02736         1 TTGGCAAAGCTCGAATGGTATTTTGAATATGAAATTCAAGTGAACCGCCC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_016740        1 TTGGCAAAGCTCGAATGGTATTTTGAATATGAAATTCAAGTGAACCGCCC     50

BSNT_02736        51 CGGACTGCTCGGGGATATTTCATCTCTTCTTGGGATGCTTTCTATCAACA    100
                     |||.||||||||||||||||||||||||||.||||||||.||.||.||.|
RBAM_016740       51 CGGCCTGCTCGGGGATATTTCATCTCTTCTCGGGATGCTGTCAATTAATA    100

BSNT_02736       101 TCGTAACGATAAACGGCGTCGATCTTTCCAGAAGGGGAATGCTCCTCAGG    150
                     |.||.||.||.|||||.|||||.||||||||||||||||||||.|||||.
RBAM_016740      101 TTGTCACAATTAACGGTGTCGACCTTTCCAGAAGGGGAATGCTGCTCAGA    150

BSNT_02736       151 TGCCGCCATATAGATCAAATTAAACGATTAGAATCAATCTTAAAAACGAT    200
                     |||||.|||||||||||||||||||||||.||||||||.||||||||.||
RBAM_016740      151 TGCCGGCATATAGATCAAATTAAACGATTGGAATCAATTTTAAAAACAAT    200

BSNT_02736       201 GGAAACAATTAAAGTAACGAAGCTTAGAGAACCGAGGCTTCGCGACCGAC    250
                     |||.||.|||||||||||||||||.|||||||||||||||||||||||.|
RBAM_016740      201 GGAGACCATTAAAGTAACGAAGCTGAGAGAACCGAGGCTTCGCGACCGTC    250

BSNT_02736       251 TTGCCGTACGCCACGGCCGTTATATTCAACGGGATGCCGATGACAAGAAA    300
                     |.||.||.||||||||..|.||.|||||.||.||||||||||||||.|||
RBAM_016740      251 TCGCAGTCCGCCACGGAAGATACATTCAGCGTGATGCCGATGACAAAAAA    300

BSNT_02736       301 ACGTTCCGCTTTGAACGGGACGAGCTTGG-CTTATTAGTCGATTTTATGG    349
                     ||.|||||.||||||.||||||||||.|| ||| .|.||.||.|||||||
RBAM_016740      301 ACCTTCCGTTTTGAAAGGGACGAGCTCGGTCTT-CTGGTTGACTTTATGG    349

BSNT_02736       350 CCGAATTGTTCAAAAAAGAAGGCCATAAATTAATCGGAATCAGAGGTATG    399
                     ||||..||||.|||||||||||.||.|||.|.|||||||||.|.||.|||
RBAM_016740      350 CCGAGCTGTTTAAAAAAGAAGGGCACAAACTGATCGGAATCCGGGGAATG    399

BSNT_02736       400 CCGCGTGTCGGGAAAACGGAATCGATTGTAGCCTCTAGTGTGTGTGCAAG    449
                     |||.|.|||||.||||||||.||.||.||.||.||.||.||.|||||.||
RBAM_016740      400 CCGAGGGTCGGAAAAACGGAGTCCATCGTTGCGTCAAGCGTTTGTGCCAG    449

BSNT_02736       450 CAAAAGGTGGCTGTTTGTGTCATCAACCTTGCTGAAGCAGACGATAAGAA    499
                     ||||||.|||||.||.||.||||||||..||||.||.||.|||||..|.|
RBAM_016740      450 CAAAAGATGGCTTTTCGTATCATCAACGCTGCTAAAACAAACGATCCGGA    499

BSNT_02736       500 GCCAGCTGATTGCCGATGAATACAGCACTGAAAATGTCTTTATCGTTGAC    549
                     ||||||||.|||||||||||||||||||.|||||.||.||||||.|.|||
RBAM_016740      500 GCCAGCTGGTTGCCGATGAATACAGCACGGAAAACGTGTTTATCCTCGAC    549

BSNT_02736       550 GGAATTGTGTCAACACGAAGAGGATCGGAACGCCATCTCCAGCTGGTCCG    599
                     ||.||.||.||.|||.||.|.|||||.||.||||||||.|||||.|||.|
RBAM_016740      550 GGCATCGTTTCGACAAGACGGGGATCTGAGCGCCATCTTCAGCTCGTCAG    599

BSNT_02736       600 AGAAATCATGCGGCTGCCTGCAACAAAAGTGGTGGAGCATCCGGACATAT    649
                     .|||||.||||||||.||.||.|||||.||.||||||||.||.||.||.|
RBAM_016740      600 TGAAATTATGCGGCTTCCGGCGACAAAGGTCGTGGAGCACCCCGATATTT    649

BSNT_02736       650 TCGTTCAAAATACAGAGTATACACTAGATGACTTTGATTATATTATTGAA    699
                     |.|||||||||.|.||||||||.||.|||||.||.|||||||||||.|||
RBAM_016740      650 TTGTTCAAAATTCGGAGTATACGCTCGATGATTTCGATTATATTATCGAA    699

BSNT_02736       700 CTGAGAAATGACCCTGATGAGGTTATTACATATGAACATGCCGAGGAACC    749
                     ||.||||||||.|||||.||.||||||||||||||||||||.||.|||||
RBAM_016740      700 CTCAGAAATGATCCTGACGAAGTTATTACATATGAACATGCAGAAGAACC    749

BSNT_02736       750 CCAAATGTTTGATCAATCCGGGTTTTCAAGCTTTGATTTTTAA    792
                     .|||||.||||||||..||||.|||||||||||||||||||||
RBAM_016740      750 GCAAATATTTGATCAGACCGGTTTTTCAAGCTTTGATTTTTAA    792


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