Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02743 and RBAM_016800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_02743___ymdA.1.9828.seq
# -bsequence dna-align/RBAM_016800___ymdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02743___ymdA-RBAM_016800___ymdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02743___ymdA-RBAM_016800___ymdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02743___ymdA
# 2: RBAM_016800___ymdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1563
# Identity: 1400/1563 (89.6%)
# Similarity: 1400/1563 (89.6%)
# Gaps: 3/1563 ( 0.2%)
# Score: 6349.0
#
#
#=======================================
BSNT_02743___ 1 ATGACCCCAATTATGATGGTTCTCATCTCCATTTTGCTGATTCTACTCGG 50
||||||||| ||||.|||||||||||||||||||||||.|||.|||||
RBAM_016800__ 1 ATGACCCCA---ATGACGGTTCTCATCTCCATTTTGCTGACTCTGCTCGG 47
BSNT_02743___ 51 TTTAGTTGTTGGCTACTTTGTTCGTAAAACCATTGCCGAAGCGAAAATTG 100
|||||||||||||||||.||||||||||||||||||||||||.||.||||
RBAM_016800__ 48 TTTAGTTGTTGGCTACTATGTTCGTAAAACCATTGCCGAAGCAAAGATTG 97
BSNT_02743___ 101 CGGGCGCACGCGGTGCAGCCGAGCAAATTCTTGAAGATGCGAAGCGTGAT 150
||||||||||||||||.|||||||||||.|||||||||||.|||||||||
RBAM_016800__ 98 CGGGCGCACGCGGTGCTGCCGAGCAAATCCTTGAAGATGCAAAGCGTGAT 147
BSNT_02743___ 151 GCTGAAGCACTGAAAAAAGAAGCTCTGCTTGAAGCAAAGGATGAAATCCA 200
|||||||||||||||||||||||||||||||||||||||||.||||||||
RBAM_016800__ 148 GCTGAAGCACTGAAAAAAGAAGCTCTGCTTGAAGCAAAGGACGAAATCCA 197
BSNT_02743___ 201 CAAACTTCGAATAGATGCTGAACAGGAAGTTCGTGAAAGACGAAATGAGC 250
.|.|||||||||||||||||||||||||||||||||||||||||||||||
RBAM_016800__ 198 TACACTTCGAATAGATGCTGAACAGGAAGTTCGTGAAAGACGAAATGAGC 247
BSNT_02743___ 251 TTCAAAAACAAGAAAACCGTTTACTCCAAAAGGAGGAAAACCTTGATCGC 300
|||||||||||||||||||||||||.|||||.||.|||||.|||||.||.
RBAM_016800__ 248 TTCAAAAACAAGAAAACCGTTTACTTCAAAAAGAAGAAAATCTTGACCGT 297
BSNT_02743___ 301 AAACATGAGGGAATTGATAAACGGGAAGCGATGTTGGAGAAGAAAGATCA 350
||||||||.|||||||||||||||||||||||||||||||||||||||||
RBAM_016800__ 298 AAACATGAAGGAATTGATAAACGGGAAGCGATGTTGGAGAAGAAAGATCA 347
BSNT_02743___ 351 TTCTCTGAATGAACGACAACAACATATTGAAGAGATGGAAAGCAAAGTGG 400
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_016800__ 348 TTCTCTGAATGAACGACAACAACATATTGAAGAGATGGAAAGCAAAGTGG 397
BSNT_02743___ 401 ATGAGATGATTCGTATGCAGCAGTCTGAGTTGGAACGAATTTCGAGTCTA 450
|||||||||||||||||||||||||.||..|.|||||.||||||||.||.
RBAM_016800__ 398 ATGAGATGATTCGTATGCAGCAGTCAGAACTCGAACGCATTTCGAGCCTG 447
BSNT_02743___ 451 ACTCGTGACGAAGCGAAACAAATCATTCTTGAGCGGGTTGAAAACGAGCT 500
||.||.||.|||||||||||||||||||||||.|||||||||||.|||||
RBAM_016800__ 448 ACACGGGATGAAGCGAAACAAATCATTCTTGACCGGGTTGAAAATGAGCT 497
BSNT_02743___ 501 TTCACATGACATCGCCATCATGACAAAAGAAACTGAAAACCGTGCGAAAG 550
|||||||||||||||||||||||||||||||||.||||||||||||||||
RBAM_016800__ 498 TTCACATGACATCGCCATCATGACAAAAGAAACCGAAAACCGTGCGAAAG 547
BSNT_02743___ 551 AAGAGGCGGATAAGAAAGCGAAAAACATTCTTTCACTCGCCTTACAGCGC 600
|||||||.|||||.||.||||||||||||||.||.||.||.||.||||||
RBAM_016800__ 548 AAGAGGCAGATAAAAAGGCGAAAAACATTCTGTCGCTTGCTTTGCAGCGC 597
BSNT_02743___ 601 TGCGCAGCGGACCACGTTGCCGAAACAACGGTATCAGTTGTCAATCTTCC 650
||.|||||.||.||.|||||||||||.||||||||.||.|||||||||||
RBAM_016800__ 598 TGTGCAGCAGATCATGTTGCCGAAACGACGGTATCGGTCGTCAATCTTCC 647
BSNT_02743___ 651 AAATGATGAGATGAAAGGACGTATCATCGGACGGGAAGGGCGTAACATTC 700
.|||||||||||||||||||||||||||||.||.||||||||||||||||
RBAM_016800__ 648 GAATGATGAGATGAAAGGACGTATCATCGGCCGTGAAGGGCGTAACATTC 697
BSNT_02743___ 701 GTACGCTTGAAACGCTGACAGGAATTGACCTGATTATTGATGATACGCCT 750
||||||||||||||||.|||||.||||||||||||||||||||.||.|||
RBAM_016800__ 698 GTACGCTTGAAACGCTTACAGGTATTGACCTGATTATTGATGACACACCT 747
BSNT_02743___ 751 GAAGCTGTCATTCTTTCCGGATTTGATCCGATCAGACGTGAGACAGCCAG 800
|||||.||||||||||||||||||||||||||||||||.|||||.||.||
RBAM_016800__ 748 GAAGCAGTCATTCTTTCCGGATTTGATCCGATCAGACGGGAGACGGCAAG 797
BSNT_02743___ 801 AATTGCTCTTGATAAACTCGTTCAGGATGGCCGTATTCATCCGGCACGGA 850
|||.|||||||||||||||||||||||||||||||||||.|||||.||.|
RBAM_016800__ 798 AATCGCTCTTGATAAACTCGTTCAGGATGGCCGTATTCACCCGGCGCGCA 847
BSNT_02743___ 851 TTGAAGAAATGGTTGAAAAATCTCGCCGCGAGGTCGATGACTATATTCGT 900
||||||||||||||||||||||.|||||.|||||.|||||||||||.||.
RBAM_016800__ 848 TTGAAGAAATGGTTGAAAAATCCCGCCGTGAGGTAGATGACTATATCCGG 897
BSNT_02743___ 901 GAGATGGGTGAGCAAACGACATTTGAGGTTGGCGTTCATGGCCTCCACCC 950
||.|||||||||||.|||||.|||||.||.||||||||.|||||||||||
RBAM_016800__ 898 GAAATGGGTGAGCAGACGACGTTTGAAGTCGGCGTTCACGGCCTCCACCC 947
BSNT_02743___ 951 AGATCTCATCAAGATCCTCGGCCGCTTAAAGTTCCGTACAAGCTACGGTC 1000
.|||||.|||||||||||||||||.||.||.|||||||||||||||||.|
RBAM_016800__ 948 GGATCTGATCAAGATCCTCGGCCGGTTGAAATTCCGTACAAGCTACGGGC 997
BSNT_02743___ 1001 AAAATGTGCTTAAGCATTCCATGGAAGTCGCATTCTTGGCCGGTCTAATG 1050
|.||.||.||.||.|||||.||||||||.||.||.||.||||||.|||||
RBAM_016800__ 998 AGAACGTACTGAAACATTCTATGGAAGTTGCGTTTTTAGCCGGTTTAATG 1047
BSNT_02743___ 1051 GCATCGGAGCTTGGTGAAGACGCAAAGCTTGCTAAACGTGCGGGTCTTCT 1100
||.||.||||||||.|||||.|||||||||||.||.||.||.||||||||
RBAM_016800__ 1048 GCTTCAGAGCTTGGAGAAGATGCAAAGCTTGCCAAGCGGGCCGGTCTTCT 1097
BSNT_02743___ 1101 TCACGACATCGGGAAAGCAATTGACCATGAAGTAGAAGGAAGCCACGTTG 1150
.||.||||||||.||||||||||||||||||||.||||||||||||||.|
RBAM_016800__ 1098 GCATGACATCGGAAAAGCAATTGACCATGAAGTGGAAGGAAGCCACGTGG 1147
BSNT_02743___ 1151 AGATCGGGGTAGAGCTTGCGACCAAATATAAAGAGCACCCAGTCGTGATT 1200
|.|||||.||.||||||||||||||||||||||||||.||||||||.|||
RBAM_016800__ 1148 AAATCGGAGTGGAGCTTGCGACCAAATATAAAGAGCATCCAGTCGTCATT 1197
BSNT_02743___ 1201 AACAGTATTGCATCACACCACGGGGACGAGGAGCCGACTTCCATTATTGC 1250
|||||||||||.|||||||||||.|||||.|||||||||||||||||.||
RBAM_016800__ 1198 AACAGTATTGCGTCACACCACGGAGACGAAGAGCCGACTTCCATTATCGC 1247
BSNT_02743___ 1251 TGTGCTGGTAGCTGCAGCAGATGCGCTTTCCGCTGCAAGACCTGGCGCAA 1300
.||.|||||.|||||.||.|||||.||.||.||.||||||||.|||||.|
RBAM_016800__ 1248 CGTTCTGGTCGCTGCCGCTGATGCACTGTCAGCCGCAAGACCGGGCGCGA 1297
BSNT_02743___ 1301 GAAGTGAGACGCTCGAGAATTATATTCGAAGACTTGAAAAACTCGAAGAA 1350
|||||||.||||||||.||.|||||.||.|||||||||||.||.||||||
RBAM_016800__ 1298 GAAGTGAAACGCTCGAAAACTATATCCGCAGACTTGAAAAGCTTGAAGAA 1347
BSNT_02743___ 1351 ATTTCTGAGTCCTACGAAGGTGTTGAAAAATCATTTGCCATTCAGGCTGG 1400
||.||.|||||.||||||||||||||||||||||||||.||||||||.||
RBAM_016800__ 1348 ATCTCCGAGTCTTACGAAGGTGTTGAAAAATCATTTGCGATTCAGGCCGG 1397
BSNT_02743___ 1401 ACGCGAAGTGCGTATTATGGTGAAGCCGGATTCAATTAATGATCTTGAGG 1450
.||.|||||.||.||.||||||||||||||.||.|||||||||.|.||.|
RBAM_016800__ 1398 CCGTGAAGTTCGCATCATGGTGAAGCCGGACTCCATTAATGATTTAGAAG 1447
BSNT_02743___ 1451 CTCATCGACTGGCGCGAGATATCCGCAAGCGAATTGAGGACGAGCTCGAT 1500
|.|||||..||||.||.||||||||.||.|||||||||||||||||.|||
RBAM_016800__ 1448 CCCATCGTTTGGCACGTGATATCCGTAAACGAATTGAGGACGAGCTTGAT 1497
BSNT_02743___ 1501 TATCCAGGTCATATTAAGGTGACAGTAATCAGAGAGACTCGAGCCGTAGA 1550
|||||.||.||.|||||.|||||.||.||||||||.||||||||||||||
RBAM_016800__ 1498 TATCCGGGACACATTAAAGTGACCGTGATCAGAGAAACTCGAGCCGTAGA 1547
BSNT_02743___ 1551 GTATGCAAAATAA 1563
|||||||||||||
RBAM_016800__ 1548 GTATGCAAAATAA 1560
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