Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03883 and RBAM_017030

See Amino acid alignment / Visit BSNT_03883 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_03883___cypA.1.9828.seq
#    -bsequence dna-align/RBAM_017030___baeS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03883___cypA-RBAM_017030___baeS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03883___cypA-RBAM_017030___baeS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03883___cypA
# 2: RBAM_017030___baeS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1415
# Identity:     759/1415 (53.6%)
# Similarity:   759/1415 (53.6%)
# Gaps:         385/1415 (27.2%)
# Score: 1606.5
# 
#
#=======================================

BSNT_03883___      1 ATGTCTTCAAAAGAAAAA--AATAGTGTAACC------------ATTTTG     36
                     |||         ||||||  ||| ||.|.|||            |.|||.
RBAM_017030__      1 ATG---------GAAAAAACAAT-GTTTCACCCACACTCACCCGAGTTTC     40

BSNT_03883___     37 ACGGAAAGTCAATT---GTCTTCGAGAGC--ATTTAAAGATGAAG-----     76
                     |||.|||..|..||   ||.||   .|||  |||.|.||| |.||     
RBAM_017030__     41 ACGAAAACCCTTTTGCGGTTTT---AAGCAGATTCAGAGA-GCAGGACCC     86

BSNT_03883___     77 CGTATGAATTTTATAAA---GAATTGCGAAAATCACAGCCTCTCTACCCA    123
                     |.||       .|||||   |||.||         ||||           
RBAM_017030__     87 CATA-------CATAAATTCGAACTG---------CAGC-----------    109

BSNT_03883___    124 TTATCTTTAGGAG----CTCTGGGGAAAGGC-TGGCTCATATCGAGATAT    168
                         .|||.||||    ||.|     ..||| ||||||||..||.|.|||
RBAM_017030__    110 ----GTTTTGGAGGCACCTTT-----CCGGCTTGGCTCATCACGCGTTAT    150

BSNT_03883___    169 GAAGA-TGCAATACATTTATTAAAGAATGAAAAATTA------AAGAAAA    211
                     ||.|| ||.|...|.|||.|.|||||..|.|.|||||      |.|.|||
RBAM_017030__    151 GATGATTGTATGGCGTTTTTGAAAGACGGCAGAATTACGAGAGATGTAAA    200

BSNT_03883___    212 AC----TATGAAAATGTATTTACCGCAAAAGAAAAACGTCCTGCTCTATT    257
                     ||    .|||            |||         ||.|..|||.||  ..
RBAM_017030__    201 ACGGGTCATG------------CCG---------AAGGAGCTGATC--GC    227

BSNT_03883___    258 GAAG---------AATGAAGA----------GTCTTTAACAAAGCATATG    288
                     ||||         |.||||||          ||||    ||.||||||||
RBAM_017030__    228 GAAGCTGAATGTCAGTGAAGATATCGATTTTGTCT----CAGAGCATATG    273

BSNT_03883___    289 CT---TAATTCAGATCCCCCTGATCA--CAACCG-CTTGCGAACTCTTGT    332
                     ||   .||   |||.|||||.|||||  ||  || ||| |||.||.|.||
RBAM_017030__    274 CTGGCAAA---AGACCCCCCGGATCATTCA--CGACTT-CGATCTTTGGT    317

BSNT_03883___    333 TCAAAAAGCATTTACGCATCGGATGATTTTCCAGTT--------GGA-AG    373
                     .||..|.|..||.||.|..|||||||||...|||.|        ||| ||
RBAM_017030__    318 GCATCAGGGGTTCACTCCCCGGATGATTGAGCAGCTTCGCACCGGGATAG    367

BSNT_03883___    374 ACAAAATCCAGCATATCGCAGA-----TTCTTTATTGGATAAAGTGCAGC    418
                              ||||.|||.||||     |.|     |||||.||.||.|  
RBAM_017030__    368 ---------AGCAGATCACAGAAGAGCTGC-----TGGATGAAATGGA--    401

BSNT_03883___    419 CCAACAAATTCATGAACCTAGTAGACGATTATGCG---TTTC----CA--    459
                       ||||||..|| ||.|||..|     ||.|||.|   ||||    ||  
RBAM_017030__    402 --AACAAAAGCA-GACCCTGAT-----ATCATGAGAGATTTCGCCGCACC    443

BSNT_03883___    460 --TTGCCGATTATCGTGATAAGTGAAATGCTTGGCATTCCCTTGGAA---    504
                       || |||.|||||||.||....|||.||||.||.|||||    |||   
RBAM_017030__    444 GCTT-CCGTTTATCGTCATTTCCGAACTGCTCGGGATTCC----GAAAGA    488

BSNT_03883___    505 -GATCG-TCAAAAATTCAGAGTGTGGTCACAAGCAATTATTGATTTTTCA    552
                      ||.|| .|.|||.|||| |||||||.||.|.|||||..|.||....|||
RBAM_017030__    489 GGACCGCGCCAAATTTCA-AGTGTGGACAAACGCAATGGTCGACACGTCA    537

BSNT_03883___    553 GATGCCCCTGAAAGACTTCAGGAGAA----TGACCA--CTTGTTAGG---    593
                              |||||     .|||.||    .|||||  |     |||   
RBAM_017030__    538 ---------GAAAG-----CGGACAAGATGCGACCAACC-----AGGCTC    568

BSNT_03883___    594 ----AGAATTTGTTGAATATTTGGAATC-CTTAGTTCGCAAAAAAAGGAG    638
                         |||||||....|||||.||.||.| ||  |.|||.|.|||||.|| 
RBAM_017030__    569 TCAAAGAATTTAAACAATATATGAAAACACT--GATCGAAGAAAAAAGA-    615

BSNT_03883___    639 CGAACCTTCAGG----AGATTTAATCAGTGCA---TTAATTCAAGCGGAA    681
                       ||.|.||.||    |||..|.|  .|.|||   || |||.|.||.|||
RBAM_017030__    616 --AAACATCCGGGTGAAGACCTGA--CGAGCAAGCTT-ATTTACGCTGAA    660

BSNT_03883___    682 -AGTGAAGGCACACAATTAAGTACAGAAGAATTGTACTCGATGATTATGC    730
                      || ||.|||..|.||.|.|||..|..|||..||||.||.|||.|..|..
RBAM_017030__    661 GAG-GACGGCCAAAAACTGAGTGAATCAGAGCTGTATTCCATGCTGTTTT    709

BSNT_03883___    731 TGCTTA-TCGTTATAGGTCATGAAACAACCGTAAACTTAAT---------    770
                     || ||| |||||...||.|.|||||||||.||.|||.|..|         
RBAM_017030__    710 TG-TTAGTCGTTGCCGGGCTTGAAACAACGGTTAACCTTCTCGGCTCCGG    758

BSNT_03883___    771 CACCAATATGACCTATGC-TCTGATGTGTCACGGTGATCAATTAGAAAAG    819
                     ||||   .||.|    || |||..||   |||...||.||..|.||.|||
RBAM_017030__    759 CACC---CTGGC----GCTTCTTCTG---CACAAAGACCAGATGGAGAAG    798

BSNT_03883___    820 CTCCGCCAGCAGCCAGACTTGATGAATTCA----GCCATAGAAGAAGCAT    865
                     .|....|.||||||.||    |...|||||    ||..|.|||| ||| |
RBAM_017030__    799 ATAAAGCGGCAGCCGGA----AAATATTCAGACGGCGGTCGAAG-AGC-T    842

BSNT_03883___    866 TGTG-GTTTCACAGC-CCTGT--TGAGTTAACGACGATTCGCTGGACGGC    911
                     |.|| |||..||..| ||.||  |.|  |.|.|.|.|.|||.|||.||..
RBAM_017030__    843 TTTGCGTTATACCTCTCCCGTCATCA--TGATGGCAAATCGATGGGCGAT    890

BSNT_03883___    912 TGAACCGTTT------------ATGCTGCATGGACAGGAGATTAAACGGA    949
                     ||||  |.||            |||.|.|          .||||||   |
RBAM_017030__    891 TGAA--GATTTCACTTATAAAGATGTTTC----------TATTAAA---A    925

BSNT_03883___    950 AA---GATGTGATCATCATTTCTTTAGCA-----TCAGCAAACCGTGATG    991
                     ||   |||.||||    |||| .|..|||     |||||.||.||.||..
RBAM_017030__    926 AAGGCGATATGAT----ATTT-ATCGGCATCGGTTCAGCCAATCGGGACC    970

BSNT_03883___    992 AGAAGATATTTCCA-AATGCCGACATATTTGATATTGAAAGAAAGAAC--   1038
                     .|.| ||||||..| .||.|.||.|.|||..||||    ||..|||||  
RBAM_017030__    971 CGGA-ATATTTTGATGATCCTGATACATTAAATAT----AGCGAGAACAC   1015

BSNT_03883___   1039 --AACCGCCATATTGCTTTTGGCCAT--GGCAATCATTTTTGCCTTGGTG   1084
                       |||||.|||||..|||||||  ||  ||||.|||||||||.||.||.|
RBAM_017030__   1016 CGAACCGTCATATCTCTTTTGG--ATTCGGCATTCATTTTTGTCTCGGGG   1063

BSNT_03883___   1085 CACAGCTAGCCCGCTTAGAAGCAAAGATTGCGATTTCCACCTTATTACGC   1134
                     |.|.|||.|||||..|.||||||...|||||        |.|||.|.|||
RBAM_017030__   1064 CTCCGCTCGCCCGGATGGAAGCATCCATTGC--------CTTTACTGCGC   1105

BSNT_03883___   1135 --------CGCTGTCCAAATATACAGTTAAAAGGCGAAAAGGAACAAATA   1176
                             ||.|.|||.||||||.||.|.|||||||.....||..|..||
RBAM_017030__   1106 TTTTAAAACGGTTTCCGAATATAGAGCTGAAAGGCGCGGCCGAGGATGTA   1155

BSNT_03883___   1177 AAATGGAAAGGGAA--------TTTTCTGATGAGAGCACTCGAAGAACTG   1218
                     |.|||||    |||        ||||    ||||||..||.|||..|.||
RBAM_017030__   1156 ACATGGA----GAAAAAATGTGTTTT----TGAGAGGGCTTGAAACATTG   1197

BSNT_03883___   1219 CCGCTTAGTTTTTAA   1233
                     ||..|.||.||||||
RBAM_017030__   1198 CCTGTCAGATTTTAA   1212


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