Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03831 and RBAM_017040

See Amino acid alignment / Visit BSNT_03831 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_03831.1.9828.seq
#    -bsequence dna-align/RBAM_017040___nucB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03831-RBAM_017040___nucB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03831-RBAM_017040___nucB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03831
# 2: RBAM_017040___nucB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity:     271/439 (61.7%)
# Similarity:   271/439 (61.7%)
# Gaps:          86/439 (19.6%)
# Score: 935.5
# 
#
#=======================================

BSNT_03831         1 -----------------ATGGTTCCGCAA---------------------     12
                                      |||| .|.||||                     
RBAM_017040__      1 ATGAATGCGTTTATGAAATGG-GCGGCAAGTCTGCTTTTGGTGATCTCTC     49

BSNT_03831        13 --CAGATCCAAGGC-------------GCATC--TTCG------------     33
                       |||.||   |||             |||||  ||||            
RBAM_017040__     50 TTCAGTTC---GGCTTTACGGGCGCCGGCATCCATTCGGACAGTGCTGCT     96

BSNT_03831        34 ---------------TATGACAAAGTGTTATATTTTCCGCTGTCTCGTTA     68
                                    ||.||..|.|||.|.|||||.||||||||....||
RBAM_017040__     97 CGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATA    146

BSNT_03831        69 TCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAGAGGGACATCCAG    118
                     ||||||.||.||.|.||||||.|.|||.||.|||.|.|..||.|||.|.|
RBAM_017040__    147 TCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGTCATTCTG    196

BSNT_03831       119 ATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCT    168
                     |.||||||||.|||||..|.|..|||||.||.||.||..||.|.|||||.
RBAM_017040__    197 AGATTTGTACAATTGATCGGGGCGGAGCGGAAAATAGAAGGAAAGAATCA    246

BSNT_03831       169 TTAAAGGGAATCCCGACCAAGCCGGGCTATGACCGGGATGAGTGGCCGAT    218
                     ||.||.|||||.|||||.|||||.||.|.||||||.|||||.|||||.||
RBAM_017040__    247 TTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCAT    296

BSNT_03831       219 GGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGACGC    268
                     |||.||||||...||||||||.||.|||||||||.||.|||||||.||.|
RBAM_017040__    297 GGCAGTCTGCACAGAAGGCGGGGCGGGGGCTGATATCAGATATGTAACCC    346

BSNT_03831       269 CTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGC    318
                     |.||.|||||.|||||.|||||.||.|||||.||.||||||||||||.|.
RBAM_017040__    347 CGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGA    396

BSNT_03831       319 TATCCTGACGGCACCAGAGTGCTGTTTATTGTGCAGTAG    357
                     |||.|.||||||||.|||||..|.|||||.||.||||||
RBAM_017040__    397 TATTCCGACGGCACGAGAGTATTATTTATCGTTCAGTAG    435


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