Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02782 and RBAM_017080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_02782___ymaC.1.9828.seq
# -bsequence dna-align/RBAM_017080___ymaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02782___ymaC-RBAM_017080___ymaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02782___ymaC-RBAM_017080___ymaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02782___ymaC
# 2: RBAM_017080___ymaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 727
# Identity: 520/727 (71.5%)
# Similarity: 520/727 (71.5%)
# Gaps: 38/727 ( 5.2%)
# Score: 1686.5
#
#
#=======================================
BSNT_02782___ 1 ATGAGAAGATTTTTACTAAATGTCAT-ATTAGTCTTAGCCATTGTCTTGT 49
||||.||||.|||||||.|||||||| |||| ||.||||.||.|||||..
RBAM_017080__ 1 ATGAAAAGAATTTTACTTAATGTCATCATTA-TCGTAGCAATGGTCTTAC 49
BSNT_02782___ 50 TCTTAAGATATGTTCATTACTCATTGGAACCTGAACCATCAAATCAGCCA 99
|..||||||.||.||||||..|.|..||.|||||.||.||.|||....|.
RBAM_017080__ 50 TAATAAGATGTGCTCATTATGCGTCAGACCCTGATCCCTCGAATTCTTCT 99
BSNT_02782___ 100 GATACATATTCAAATTTCAGCAG-CTTAGCAGAGAATGAGAG-CCCAGCC 147
||||||||..||.||||.| .|| .||.||.||..|||| || |||.|..
RBAM_017080__ 100 GATACATACACAGATTTTA-AAGATTTGGCTGAACATGA-AGACCCCGAT 147
BSNT_02782___ 148 GATTACGATATTTCATATAATGAGAAAAAAGGAAGCAAAGTCTTAATTAT 197
|||||..||||.||.||.|||.||..|||.||.|||...||.||.||.||
RBAM_017080__ 148 GATTATCATATATCGTACAATAAGCGAAAGGGGAGCCCCGTATTGATCAT 197
BSNT_02782___ 198 GTCTCCGCATGGCGGAAGAATTGAAGGCGGAGTAAGTGAGCTTGTTCGTT 247
|||.|||||.||.||.||||||||.|||||.||.||.|||.|.||.||.|
RBAM_017080__ 198 GTCGCCGCACGGAGGGAGAATTGAGGGCGGGGTGAGCGAGATCGTCCGCT 247
BSNT_02782___ 248 ATTTCAATAATGAATACTCTACATACCTGTTTGAAGGGTTGAAGTCCCAC 297
.|||||...||||.|||||.||.||.||||||||.||.||.||..|.||.
RBAM_017080__ 248 CTTTCAGAGATGATTACTCAACCTATCTGTTTGAGGGATTAAAAACGCAT 297
BSNT_02782___ 298 GATAACCAAACGCTGCACATTACAAGCACCAACTTTGATGAGCCATTGGC 347
||||||||.||.||.||.|||||.|||||||..||.||||||||.|..||
RBAM_017080__ 298 GATAACCAGACTCTTCATATTACGAGCACCAGGTTCGATGAGCCTTCAGC 347
BSNT_02782___ 348 A--AAAAAGAAAATCAAGGAGCATCAATATGTGGTGGCTTTTCACGGATA 395
| ..|||| .||.|||.||||.||.|||||..|.||..|||||||.||
RBAM_017080__ 348 AGTCGAAAG--CATTAAGCAGCACCATTATGTTATCGCAGTTCACGGTTA 395
BSNT_02782___ 396 TAAAGGGGAGAACAAGAATACGCTTGTCGGGGGAACAGACCGAAAGCGGG 445
|||.||.||..|.||.|||||.||||||||.||||..|||||.|||||||
RBAM_017080__ 396 TAAGGGCGACGAGAAAAATACTCTTGTCGGAGGAAGCGACCGGAAGCGGG 445
BSNT_02782___ 446 CGAAAATGATT-GTGAGAGCCCTTGAGCGGAGAGGGTTTTCCGCTGAGTT 494
|||||| .||| ||||||||.||.||.||.|..||.|||||.||.||.||
RBAM_017080__ 446 CGAAAA-AATTGGTGAGAGCTCTCGAACGAAACGGATTTTCTGCAGAATT 494
BSNT_02782___ 495 AGCGTCGTCTAAAAGCGGTCTTG-CTGGATTGA-ATGCCGAAAACATTAA 542
.||..|..|.||||.||||||.| |.||.|||| | |||||||.||.||
RBAM_017080__ 495 GGCAACCACAAAAACCGGTCTGGCCGGGGTTGACA--CCGAAAATATCAA 542
BSNT_02782___ 543 TAACCAAGGGGAAACGGGGCTAAGTATCCAGCTGGAAATCAGCCGTGAGC 592
||||||.|.|.||||.|||||.||.||.|||||.||.||||||.|.||.|
RBAM_017080__ 543 TAACCAGGCGCAAACCGGGCTGAGCATACAGCTTGAGATCAGCAGAGAAC 592
BSNT_02782___ 593 AGAGAGAAGCATTTTTTGATGATTTTTATTA----TAAAAATAGAAAATA 638
||.|.|||||.|||||||||.|||||.|||| .|| ||..|||.
RBAM_017080__ 593 AGCGGGAAGCGTTTTTTGATAATTTTGATTACCGCGAA----AGGGAATT 638
BSNT_02782___ 639 CACAAAGAAC--AGTGAATTTTA-TGCTTATGTCAGTGCGATCAAAGGTG 685
|||||| ||| || |||||||| .|.|| ||||.||.||||.|||.|.|
RBAM_017080__ 639 CACAAA-AACGGAG-GAATTTTACCGGTT-TGTCCGTACGATAAAAAGAG 685
BSNT_02782___ 686 TCCTGGA--AA--AAGAGTATTTGTAA 708
| || || |||||||||.||||
RBAM_017080__ 686 T----GATCAATCAAGAGTATTCGTAA 708
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