Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02790 and RBAM_017150

See Amino acid alignment / Visit BSNT_02790 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:44
# Commandline: needle
#    -asequence dna-align/BSNT_02790___ymzC.1.9828.seq
#    -bsequence dna-align/RBAM_017150___ymzC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02790___ymzC-RBAM_017150___ymzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02790___ymzC-RBAM_017150___ymzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02790___ymzC
# 2: RBAM_017150___ymzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 310
# Identity:     189/310 (61.0%)
# Similarity:   189/310 (61.0%)
# Gaps:          71/310 (22.9%)
# Score: 567.0
# 
#
#=======================================

BSNT_02790___      1 TTGTTTGAAAGTGAAGCAGAACTGAGACGAATCAGGATTGCACTTGTATG     50
                     .||||.|||||||||...|||||||||.|||||||||||.|.||.||.||
RBAM_017150__      1 GTGTTCGAAAGTGAAAATGAACTGAGAAGAATCAGGATTACGCTCGTTTG     50

BSNT_02790___     51 GATAGCTGTCTTTTTACTGTTCGGGGCGTGCGGGAATCAAGATAC-----     95
                     |||.|||||.|||||.|||||.||.||.|||.|.|||||.||.||     
RBAM_017150__     51 GATCGCTGTTTTTTTGCTGTTTGGAGCTTGCAGCAATCATGAGACGGTGG    100

BSNT_02790___     96 -----CATTATTGAAACAGACAGCGGCAATTCAGAC-TAT---GAAACGC    136
                          .||.||       |||.|||||   ||| || .||   |||   |
RBAM_017150__    101 TGACGGATGAT-------GACGGCGGC---TCA-ACGGATGCCGAA---C    136

BSNT_02790___    137 CTCAGCC------CACCTCGTTTCCA-CTTGAACATAACCATTTTGGCGT    179
                     |.|||.|      ||  |.|  |.|| ||.||||||||.|..||.|||.|
RBAM_017150__    137 CGCAGACAGAAGGCA--TGG--TGCAGCTGGAACATAATCGGTTCGGCAT    182

BSNT_02790___    180 GATGGAGGACGGCTATATCAAAATTTATGAGTATAATGAGTCCCGCAATG    229
                     ..|.||||||||.||..|.|||||.||               ||||.|||
RBAM_017150__    183 CGTCGAGGACGGTTACTTAAAAATATA---------------CCGCTATG    217

BSNT_02790___    230 AGGTAA---------------AGCTGAAGAAAGAATAC-GCGGATGATGA    263
                     |.|.||               |.|||||.|||||| || |||...|||||
RBAM_017150__    218 ATGAAAAAACGAATAAAATCGAACTGAAAAAAGAA-ACGGCGCTGGATGA    266

BSNT_02790___    264 GCTTGAATAA    273
                     ||||||||||
RBAM_017150__    267 GCTTGAATAA    276


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