Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02959 and RBAM_017680

See Amino acid alignment / Visit BSNT_02959 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_02959___ynzC.1.9828.seq
#    -bsequence dna-align/RBAM_017680___ynzC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02959___ynzC-RBAM_017680___ynzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02959___ynzC-RBAM_017680___ynzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02959___ynzC
# 2: RBAM_017680___ynzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 235
# Identity:     182/235 (77.4%)
# Similarity:   182/235 (77.4%)
# Gaps:           2/235 ( 0.9%)
# Score: 686.0
# 
#
#=======================================

BSNT_02959___      1 ATGATTTCAAACGCGAAAATTGCCAGAATTAATGAACTTGCTGCCAAAGC     50
                     ||||||||.||.|..|||||.||.||||||||.|||.|.|||...|||||
RBAM_017680__      1 ATGATTTCTAAAGAAAAAATCGCAAGAATTAACGAATTGGCTCAAAAAGC     50

BSNT_02959___     51 TAAAGCTGGCGTTATTACAGAAGAAGAAAAAGCCGAACAGCAAAAGCTCC    100
                     ||||.|...|...||.||.||.||.||||||||.||||||||||||||.|
RBAM_017680__     51 TAAATCAAACACGATAACGGATGAGGAAAAAGCTGAACAGCAAAAGCTTC    100

BSNT_02959___    101 GTCAAGAGTACTTGAAAGGTTTTCGTTCTTCTATGAAGAACACGTTAAAA    150
                     |.||.|||||.||||||||.||.||.||.||.|||||.||.||||||||.
RBAM_017680__    101 GCCAGGAGTATTTGAAAGGATTCCGCTCCTCAATGAAAAATACGTTAAAG    150

BSNT_02959___    151 AGTGTGAAAATCATTGACCCAGAAGGCAATGATGTTACACCAGAAAAGCT    200
                     ||.||.|||.|.|||||.||.||||||||.|||||.||.||.|||||..|
RBAM_017680__    151 AGCGTAAAAGTGATTGATCCGGAAGGCAACGATGTCACCCCTGAAAAATT    200

BSNT_02959___    201 AAAAAGAGAACAA-AGAAATAACAAACTTCACTAA    234
                     ||||||||||||| ||||| ||.||.|||||.|||
RBAM_017680__    201 AAAAAGAGAACAACAGAAA-AATAATCTTCATTAA    234


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