Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02980 and RBAM_017820

See Amino acid alignment / Visit BSNT_02980 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:50
# Commandline: needle
#    -asequence dna-align/BSNT_02980.1.9828.seq
#    -bsequence dna-align/RBAM_017820.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02980-RBAM_017820.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02980-RBAM_017820.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02980
# 2: RBAM_017820
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 192
# Identity:     105/192 (54.7%)
# Similarity:   105/192 (54.7%)
# Gaps:          66/192 (34.4%)
# Score: 441.0
# 
#
#=======================================

BSNT_02980         1 ATGCTCAGATATGCTTACAAGTTTTCAGAATTGGAAAAAATAAAAGAATA     50
                                                                       
RBAM_017820        0 --------------------------------------------------      0

BSNT_02980        51 TGCGGAGGTGAGAAGCGTGAAGAAGATGAGAAAACGTTCTTTTCATGAGC    100
                                     .||||.||.|||.|||||||||||||||||||..
RBAM_017820        1 ----------------TTGAAAAAAATGCGAAAACGTTCTTTTCATGAAT     34

BSNT_02980       101 TCGTCATGGAAAACAAAAAAGAGCTGATGACCAATACAGAGTATTTAAAT    150
                     |.||.||||||||.|||...|||||||||||||||||.||.|||||.|||
RBAM_017820       35 TGGTTATGGAAAATAAACGTGAGCTGATGACCAATACGGAATATTTGAAT     84

BSNT_02980       151 CAGCTTGAGGAAAAGCTTGAACAGCGATTTAAGCAAAAATAA    192
                     ||||||||.||||||||.||.|||||.||.||.|||||||||
RBAM_017820       85 CAGCTTGAAGAAAAGCTGGAGCAGCGGTTCAAACAAAAATAA    126


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