Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03294 and RBAM_017950

See Amino acid alignment / Visit BSNT_03294 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03294___kdgK.1.9828.seq
#    -bsequence dna-align/RBAM_017950.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03294___kdgK-RBAM_017950.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03294___kdgK-RBAM_017950.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03294___kdgK
# 2: RBAM_017950
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1200
# Identity:     558/1200 (46.5%)
# Similarity:   558/1200 (46.5%)
# Gaps:         468/1200 (39.0%)
# Score: 968.0
# 
#
#=======================================

BSNT_03294___      1 ATGAAGCTTGATGCGGTGACATTCGGGGAATCAATGGCCATGTTTTACGC     50
                                    |||.| |||.|   || .|||| ||| ||||||| 
RBAM_017950        1 ---------------GTGGC-TTCTG---AT-TATGG-CAT-TTTTACG-     27

BSNT_03294___     51 AAATGAGT-ATG-GAGG----CCTTCATGAAGTATCC------------A     82
                       ||..|| ||| ||.|    ||||.|      ||||            |
RBAM_017950       28 --ATCGGTGATGCGATGATCACCTTAA------ATCCCGCAAGCACAGGA     69

BSNT_03294___     83 CTTTTTC----------------------TAAAG--GGCTTGCCGGAGCA    108
                     |.|||.|                      .||||  ||     .|||||.
RBAM_017950       70 CCTTTGCGTTTTGTTACCCATTTTGAACGAAAAGCAGG-----AGGAGCT    114

BSNT_03294___    109 GAAAGCAATGTCGCCTGCG---GCCT-TGCCAGACTCGGATTCCG-----    149
                     |||...|||.|    ||||   ||.| .||||||.|  ||.||.|     
RBAM_017950      115 GAACTGAATTT----TGCGATTGCATGCGCCAGATT--GAATCTGCACTC    158

BSNT_03294___    150 AATGGGATGGATGAGCAAGGTCGGCAATGATCAGCTCGGAACG-----TT    194
                     ||.|   |||.|.||||...|.||.||.|||.||.||||.| |     ||
RBAM_017950      159 AAAG---TGGGTCAGCAGACTGGGGAAGGATGAGTTCGGCA-GAGTGATT    204

BSNT_03294___    195 TAT---TTTACAAGAGCTTAAAAAAGAGGGAGTGGATGTGTCCCGTGTGA    241
                     |||   |||.|.||||       .|||.|||.|.||||||.|     |||
RBAM_017950      205 TATCAGTTTGCCAGAG-------GAGAAGGAATTGATGTGAC-----TGA    242

BSNT_03294___    242 TCCG-CTCGCAGGACGAAAATCCCACCGGGCTGCTGCTTAAGTC---AAA    287
                       || |||..|.|..|||          ||||  |.|.||..||   |||
RBAM_017950      243 --CGTCTCCTATGTTGAA----------GGCT--TTCCTACATCTTTAAA    278

BSNT_03294___    288 AGTGAAAGAAGGCGACCCGCAA-----GTTACCTACTATAGGAAAAAC--    330
                     .||.|||||    ||.|.|.||     |||        .|||.|||||  
RBAM_017950      279 TGTCAAAGA----GATCAGAAATGACGGTT--------CAGGCAAAACGT    316

BSNT_03294___    331 -------TCAGCTGCAAGCACATTAAC---TTCTG----------CTGA-    359
                            || |.|.||     |||.||   |||||          |.|| 
RBAM_017950      317 TTTATTATC-GTTTCA-----ATTCACCAATTCTGACTCTTGCACCGGAA    360

BSNT_03294___    360 -ATATCCGAGAGATTATTTTCAATGCGCAGGCCATT-------TGCATGT    401
                      ||||...|||||.|||.||   ||   |.|.||||       |.|||.|
RBAM_017950      361 GATATAACAGAGAATATGTT---TG---ACGGCATTCACATCGTTCATCT    404

BSNT_03294___    402 GACAG--GCATTCCGCCTGC-CTTATCAGCCGAGATGAAAGA-CTTCA--    445
                     .||.|  |..||||.|  || |||       ||.|.||||.| |||.|  
RBAM_017950      405 TACCGGTGTGTTCCTC--GCGCTT-------GATAAGAAAAATCTTGAAA    445

BSNT_03294___    446 --------------CGTACCATGTCATGAACGACATGAGAAACGCAGGGA    481
                                   |.|.||||        ||.|      ||.|||.|.|
RBAM_017950      446 TTGCTGAAAGGGTGCTTTCCAT--------CGCC------AAAGCAAGAA    481

BSNT_03294___    482 AAA---CCATTTCATTCGACCCTAATGTAAGACCTTCGCTTTGGCCTGAT    528
                     |.|   ||.|.||.||.||.||.|||.|.||.|....|||.|||.| |||
RBAM_017950      482 AGATTCCCGTATCTTTTGATCCGAATATCAGGCTGAAGCTGTGGAC-GAT    530

BSNT_03294___    529 CAAGCAACAATGG------------TACACACAATCAACGATCTGGCTGG    566
                     ..||.|     ||            |.|     |||||  ||||      
RBAM_017950      531 TGAGGA-----GGCGCGTGCGGCATTTC-----ATCAA--ATCT------    562

BSNT_03294___    567 GCTT--GCAGACTG--GTTTTTCCCGGGTATCGCAGAGGGAGAGCTATTG    612
                       ||  |||.||||  .||.|||       |.||   |||          
RBAM_017950      563 --TTCCGCATACTGATATTCTTC-------TGGC---GGG----------    590

BSNT_03294___    613 ACCGG--AGAAA--AAACACCTGA-AGGCATTGCCGACTATTATTTGAAA    657
                      ||||  .||||  |||||.|||| |||.|           ||...||||
RBAM_017950      591 -CCGGGACGAAATGAAACAGCTGACAGGTA-----------TAGGGGAAA    628

BSNT_03294___    658 A--AAG---GTGCCAGCTTTGTCG----CTATTAAA--------CTCG--    688
                     |  |||   ..|||.|.||||..|    |||||.||        ||||  
RBAM_017950      629 ATGAAGCATTAGCCCGGTTTGCAGAGACCTATTCAATCAGTCAGCTCGTC    678

BSNT_03294___    689 -GAAAAGAAG--------------GCGCTTACTTTAAAACGGGGACAAGT    723
                      .||||||.|              |||    ||.||..|.|...|.||||
RBAM_017950      679 ATAAAAGACGGTGAATCAGGTTCTGCG----CTGTATCATGATCATAAGT    724

BSNT_03294___    724 GAAGGATT-TCTAGAAGGCTGCCGGGTCGACCGGGTG-----GTTGATAC    767
                        ||||| .|.|..|||||..|       ||||.||     |||||.||
RBAM_017950      725 ---GGATTCACAAAGAGGCTTTC-------CCGGTTGCGCCTGTTGACAC    764

BSNT_03294___    768 GGTCGGCGCCGGAGACGGATTTGCAGTCGG-----TGTA-----ATCAGC    807
                     |||.||.||.||.|||||.|||...|.|||     ||||     |||.||
RBAM_017950      765 GGTAGGAGCGGGTGACGGCTTTAATGCCGGCTACCTGTACAGTTATCTGC    814

BSNT_03294___    808 GGTGTCCTAGACGGTTTGTCGTACAAGGATGCGGTGCAAAGGGGAAATGC    857
                               |.|||||                 ||  ||..|||||..|
RBAM_017950      815 ----------ATGGTTT-----------------TG--AACCGGAAAAAC    835

BSNT_03294___    858 GATTGGCGCTTTGCAAGTGCAGGCACCGGGGGATATGGACGGTTTGC-CG    906
                     |..|||.| |||||.|.|||                ||.||||..|| ||
RBAM_017950      836 GTCTGGAG-TTTGCCAATGC----------------GGTCGGTGCGCTCG    868

BSNT_03294___    907 --ACCA-------GGGAGA-AATTA---GCTTCTTTTTTATCTGCTCAAA    943
                       ||||       .||.|| |||.|   |||||   ..|||||      |
RBAM_017950      869 TCACCACAGTTTCCGGTGACAATGAAGGGCTTC---CCTATCT------A    909

BSNT_03294___    944 GAA-CGGTTC------ACCAAAAGAAAG-----GGGATTATTAA------    975
                     ||| .|||||      .|..|||.||||     |.|||  |.||      
RBAM_017950      910 GAAGAGGTTCTGTCATTCGTAAACAAAGAGACTGTGAT--TGAACGGTAG    957


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