Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02095 and RBAM_017990

See Amino acid alignment / Visit BSNT_02095 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_02095___yjmF.1.9828.seq
#    -bsequence dna-align/RBAM_017990___yjmF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02095___yjmF-RBAM_017990___yjmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02095___yjmF-RBAM_017990___yjmF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02095___yjmF
# 2: RBAM_017990___yjmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity:     620/865 (71.7%)
# Similarity:   620/865 (71.7%)
# Gaps:          56/865 ( 6.5%)
# Score: 2059.5
# 
#
#=======================================

BSNT_02095___      1 ATGATCCCACTGCATGAGAAC--CTGACTGGTAAAACGGCTGTCATCACT     48
                     ||||..||..|.|||  ||||  .|..|.||.|.|||.||||||||.||.
RBAM_017990__      1 ATGAAACCGATTCAT--GAACGTTTATCAGGAAGAACCGCTGTCATAACA     48

BSNT_02095___     49 GGCGGCAGCGGCGTGCTTTGCTCTGCGATGGCACGGGAGCTAGCCCGTCA     98
                     |||||.|||||.||.||.||.||.||.||||||..||||||..|.||.||
RBAM_017990__     49 GGCGGGAGCGGTGTTCTCTGTTCAGCAATGGCAAAGGAGCTTTCACGGCA     98

BSNT_02095___     99 TGGCATGAAGGTGGCGATATTGAATCGGACGGCTGAAAAAGGCCA-AGCG    147
                     .||.|||||..|.|||||..|.|..||||...||||.||||  || ||||
RBAM_017990__     99 GGGGATGAAAATTGCGATCGTCAGCCGGAATACTGATAAAG--CAGAGCG    146

BSNT_02095___    148 ---GTCGTGAAGGAGATAACGGCGGCTGGCGGCACAGCGTGCGCTGTTGC    194
                        |.||.|  .|||||..|.|..|||||.||.||      |||.|||.|
RBAM_017990__    147 TGCGGCGGG--CGAGATTGCTGACGCTGGAGGAAC------CGCGGTTTC    188

BSNT_02095___    195 TG---CGGATG-TGCTGGACAG-----GATGTCACTGGAACGGGCAAAGG    235
                     ||   |||.|| ||.|  .|||     ||| ||.||.|||..||||||.|
RBAM_017990__    189 TGTACCGGCTGATGTT--TCAGCCCGTGAT-TCGCTCGAAAAGGCAAAAG    235

BSNT_02095___    236 AAGACATCCTTGGCCAATTTGGCGCTGTTGATCTGTTAATTAACGGGGCT    285
                     |.||.||..|..|||..||.||..||||..||||.|||||||||||.||.
RBAM_017990__    236 ACGAGATTATCAGCCGGTTCGGTTCTGTCAATCTTTTAATTAACGGAGCC    285

BSNT_02095___    286 GGCGGCAATCATCCTGACGCGATAACCGATGTG-----GAGACATATGAA    330
                     ||.||.||.||.|||||.|||||.||     ||     |||||.||||||
RBAM_017990__    286 GGGGGAAACCACCCTGATGCGATCAC-----TGCCAGCGAGACGTATGAA    330

BSNT_02095___    331 GAAGCGG--GAGAAGGCCA-ATCCTTTTTTGATATGGATGAGA-GGGGCT    376
                     ||   ||  |||.|||.|| ||||||||||||||||||.||.| ||||.|
RBAM_017990__    331 GA---GGATGAGCAGGGCACATCCTTTTTTGATATGGACGAAACGGGGTT    377

BSNT_02095___    377 TTCTAACTGTATTCTCCACCAATTTCACCGGTGCGTTTCTGGCCTCGCAA    426
                     |||.|.| |||||.||.|||||.||.||||||||.||||||||.||||||
RBAM_017990__    378 TTCCAGC-GTATTTTCAACCAACTTTACCGGTGCATTTCTGGCATCGCAA    426

BSNT_02095___    427 GTGTTTGGAAAAGAGCTGCTGAAAGCCGATTCACCGGCGATCATCAACCT    476
                     ||||||||||||||.||..||||.||.||.|..||.|||||.||.||..|
RBAM_017990__    427 GTGTTTGGAAAAGACCTTTTGAAGGCGGAATGTCCCGCGATTATTAATAT    476

BSNT_02095___    477 TTCTTCCATGAGTGCTTATTCACCTATGACGAAGGTTCCGGCATACAGTG    526
                     ||||||.||||||||.|||.||||.|||||.|||||.||.||.|||||.|
RBAM_017990__    477 TTCTTCTATGAGTGCGTATACACCGATGACAAAGGTGCCCGCCTACAGCG    526

BSNT_02095___    527 CCGCGAAAGCATC-CATCAATAATTTTACGATGTGGATGGCTGTTCATTT    575
                     |.||.||.||..| |.|| |.|||||||||||||||||||||||||||||
RBAM_017990__    527 CGGCCAAGGCGGCGCTTC-AGAATTTTACGATGTGGATGGCTGTTCATTT    575

BSNT_02095___    576 TGCCGAAACCGGGCTGCGGGTCAATGCGATTGCCCCAGGCTTCTTTCTGA    625
                     .||..|||..|||||||||||.|||||.||.|||||.||.||||||.|||
RBAM_017990__    576 CGCAAAAAAAGGGCTGCGGGTGAATGCCATCGCCCCGGGTTTCTTTTTGA    625

BSNT_02095___    626 CAAAACAAAATCATGATCTGCTGATCA-ACCAAGACGGAACGT-TCACCA    673
                     |....|||||.|.||...|| |.||.| |..||||.|||| || |.| ||
RBAM_017990__    626 CTGCGCAAAACCGTGGGTTG-TTATTACAGGAAGATGGAA-GTCTGA-CA    672

BSNT_02095___    674 G-CCGATCTCACAAAATTATTGCGGGAACACCGATGAAGCGCTTCGGAAA    722
                     | ||||||..|.||.|||||.||....|||||||||||.||.|||||.||
RBAM_017990__    673 GACCGATCCAATAAGATTATGGCACATACACCGATGAAACGTTTCGGGAA    722

BSNT_02095___    723 ACCCGAGGATTTGCTCGGTACGCTTCTTTGGCTGGCGGATGAATCCTATT    772
                     |||.||.||..|.||.||.|||||.||.|||||..|||||||.||.|..|
RBAM_017990__    723 ACCGGAAGACCTTCTGGGAACGCTCCTGTGGCTTTCGGATGATTCATGCT    772

BSNT_02095___    773 CGGGTTTTGTCACTGGGATCACCGTTCCTGTCGATGGAGGATTTATGGCT    822
                     |.||.||||||||.|||.||||||||||.|||||.|||||.|||||||||
RBAM_017990__    773 CAGGCTTTGTCACCGGGGTCACCGTTCCCGTCGACGGAGGTTTTATGGCT    822

BSNT_02095___    823 TATTCAGGTGTGTAA    837
                     |||||.||.||||.|
RBAM_017990__    823 TATTCCGGAGTGTGA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02095 and RBAM_017990

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
