Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02947 and RBAM_018040

See Amino acid alignment / Visit BSNT_02947 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_02947___yndJ.1.9828.seq
#    -bsequence dna-align/RBAM_018040___yndJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02947___yndJ-RBAM_018040___yndJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02947___yndJ-RBAM_018040___yndJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02947___yndJ
# 2: RBAM_018040___yndJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1792
# Identity:    1162/1792 (64.8%)
# Similarity:  1162/1792 (64.8%)
# Gaps:         224/1792 (12.5%)
# Score: 3779.5
# 
#
#=======================================

BSNT_02947___      0 --------------------------------------------------      0
                                                                       
RBAM_018040__      1 TTGCTTCAGCATAAAGGTTCATGTGAAAAATCGGATACTCGGCACGCTTT     50

BSNT_02947___      1 ----------------------------------------ATGC---AAC      7
                                                             ||||   |.|
RBAM_018040__     51 TCTCTTACCGGGGGACTTTCCGGGAAACAGAGGGAGAAACATGCTGAAGC    100

BSNT_02947___      8 GAAATGGCATAGTCAGTGCGCTTTGTTTTATAGGATTTCTTGCAGCGGAA     57
                     |..||..|||.||..|.|.|.||||.|||.|.||||||...||.||.|||
RBAM_018040__    101 GTCATCTCATGGTATGCGTGATTTGCTTTTTGGGATTTGCGGCGGCTGAA    150

BSNT_02947___     58 GCACCGGATATTTCAGTGGCAGAGGCACTCGTTTTGTTATCCATTCTATT    107
                     ||.|||.||||.|||...||.|||.|..|.|||||.||.|||.|.||.||
RBAM_018040__    151 GCTCCGCATATATCAACTGCTGAGACGTTTGTTTTATTTTCCGTACTTTT    200

BSNT_02947___    108 TTTCGTGCCGGGAATTTTCCCTTTTGTTTTT----CGTCAATCGCCGGTT    153
                     ||||||.||.|...|.|||..|||||.||||    ||||||.|.||    
RBAM_018040__    201 TTTCGTTCCCGCTGTATTCGATTTTGCTTTTCGGCCGTCAAACACC----    246

BSNT_02947___    154 CGTGCTGCTCAGTTTATGGAATATGGGCTAATCCAGTGCTATCCGGCAGC    203
                                  |||  ||..|||.|.||.|.|.|.|.|||||.|..||
RBAM_018040__    247 -------------TTA--GAGAATGTGTTATTACGGAGTTATCCTGTTGC    281

BSNT_02947___    204 CGCATTCTTTGCGGTGTTGGCTCTTGTGACAGA----GGTTGGAGTTTTC    249
                     |||.||.|.|||||||.|.||.|||||.|||||    .|||    ||||.
RBAM_018040__    282 CGCTTTATGTGCGGTGCTTGCGCTTGTCACAGACTTCAGTT----TTTTT    327

BSNT_02947___    250 GCACTTATCTGGTGGATGTACACAGTTTTTA---------TTGCATTGTA    290
                     ||..||.|.|||        |.| ||||.||         |.|||.||||
RBAM_018040__    328 GCCGTTGTATGG--------CTC-GTTTATACGCTTGGGCTGGCACTGTA    368

BSNT_02947___    291 TGCGATCCTCCGCCTTTGGGAAACAAAGATACATAGAATCGAAGAGACAT    340
                     |||..|||..||.||...|.|||||||.||.|||||||..|||||||..|
RBAM_018040__    369 TGCTGTCCGGCGGCTGATGAAAACAAATATTCATAGAACAGAAGAGATGT    418

BSNT_02947___    341 CAGTTTTGTTCGGCCTT-ATTTATTTGGCGGGAGGAGGATTTTGGTTTTT    389
                     |.|||.|| .|||..|| |||||||||||.||.||.|||||.|||||.||
RBAM_018040__    419 CTGTTATG-GCGGGTTTCATTTATTTGGCCGGGGGCGGATTCTGGTTCTT    467

BSNT_02947___    390 TGCTTATGCTGCCCATTTGCAGA------TCATGCAATTT-GGCCCTCTC    432
                     .||.||   ||.||  ||| |||      ||||| ||||| |||||.||.
RBAM_018040__    468 CGCATA---TGTCC--TTG-AGATTCCCGTCATG-AATTTCGGCCCGCTT    510

BSNT_02947___    433 ATCATTTTGCTTACTGCTGTCCACTTTCACTATTCTGCTTTTCTGATCCC    482
                     |||.||.||||.||.||.||.||||||||||||||.|||||.||.||.||
RBAM_018040__    511 ATCGTTCTGCTGACGGCGGTGCACTTTCACTATTCCGCTTTCCTCATTCC    560

BSNT_02947___    483 GATCTTCAACGGATTACTCGGCAGAACCAT----TAGAAAACATCGGATG    528
                     ||||||.||||||||.||||||||.|.|||    .|||||    |||.|.
RBAM_018040__    561 GATCTTTAACGGATTGCTCGGCAGGATCATACGGGAGAAA----CGGGTT    606

BSNT_02947___    529 TTGTACAGTTGGATAACATGGG---TGATTTTGCTTTCGCCCCTTCTTAT    575
                     .|.|||||.||||..||   ||   |.||||||.|||||||..|.|||||
RBAM_018040__    607 CTTTACAGATGGAGCAC---GGTCATTATTTTGATTTCGCCGATCCTTAT    653

BSNT_02947___    576 CGCACTGGGCATCACATATTCAAAAACACTTGATGTCATTGCGGTTAGC-    624
                     .||.|||||.||.||||.||||||.|||||||||||.|||||.| |.|| 
RBAM_018040__    654 TGCCCTGGGGATTACATTTTCAAAGACACTTGATGTGATTGCTG-TCGCT    702

BSNT_02947___    625 ATTTATATGGCGGCGATTTATCTTCATGCATTTTTGGTGTTCACGGCAGC    674
                     .|.|||.||||||...|.|||.|..||||.|.|.|.||.||.|||||..|
RBAM_018040__    703 CTGTATCTGGCGGGTCTGTATGTAAATGCTTATCTCGTCTTTACGGCGCC    752

BSNT_02947___    675 TTTTCGCACCAAGACGG---GGACATTTCTT-ATTCGGCTTTCTTCCGCT    720
                     .|||...||.||.||.|   |||    |||| ||..||..||||||.|||
RBAM_018040__    753 GTTTGTTACGAAAACAGGCAGGA----TCTTGATCAGGAGTTCTTCGGCT    798

BSNT_02947___    721 GTTTTAATGATAACGATTGCTTTCTCGATGATTTATTCATTTGGTGTATT    770
                     ||.||||||||.||.||||||||.||..||||.|||||.|..|||||.|.
RBAM_018040__    799 GTGTTAATGATCACAATTGCTTTTTCTTTGATATATTCGTACGGTGTCTA    848

BSNT_02947___    771 TCGGCAAGAAGTTACATTGACCATCAATCAGATGATTTGGATTCACGGTT    820
                     .||..|.||.|..||..|.||.||||..||||||||||||||||||||..
RBAM_018040__    849 CCGCGAGGAGGCAACGCTCACGATCAGCCAGATGATTTGGATTCACGGGG    898

BSNT_02947___    821 TTGTCAATGCGTTTGGTGTTATCTTGCCCGCTCTCATAGGGTGGAGAATA    870
                     ..||||||||.||.||.||||||.||||.|||.|....||||||||..|.
RBAM_018040__    899 CCGTCAATGCATTCGGCGTTATCCTGCCGGCTTTGGCGGGGTGGAGGTTG    948

BSNT_02947___    871 GAGGATGCGAAGCCTTTTGATGCAGACAGTGTAAAG-ACATTCAGCCGTA    919
                     ||..||.|||..||.|||||||..|.||||| |||| ||.||||||||||
RBAM_018040__    949 GAAAATCCGAGACCGTTTGATGAGGGCAGTG-AAAGAACGTTCAGCCGTA    997

BSNT_02947___    920 TCTACGGAAAAAGAAAGATTGGAGAAGAATTTTTAGCTAACATTCAAGCT    969
                     |.|||||.||.||||.|||.||..||||||||||..||.|.|||||.||.
RBAM_018040__    998 TTTACGGGAAGAGAACGATAGGCAAAGAATTTTTGACTGATATTCATGCA   1047

BSNT_02947___    970 GAAAATAACGCTCGGTACAGCGGGCTTGTGGATGATATGGGCAG-CCTGC   1018
                     |.||||.||.|.|..||.|.|||.|||.|||||.|.|||.| || .||||
RBAM_018040__   1048 GCAAATGACACCCATTATACCGGCCTTCTGGATCAGATGAG-AGAACTGC   1096

BSNT_02947___   1019 GTTCAAAAGATTTTTCACCAGAAAAACTGGCGCCGCTCATTCTTTCGTTT   1068
                     .|||..||||.||||||.|.|||||||||||||||..|.||..|||.|||
RBAM_018040__   1097 ATTCTGAAGACTTTTCAACTGAAAAACTGGCGCCGGCCGTTAATTCCTTT   1146

BSNT_02947___   1069 TATGAACAAACCATCGAATACAATATTAAAGCAAAAGTAACATGGAGCAT   1118
                     ||||||.|.||.||.||.||..|.||.|..||||||||.||.|||||||.
RBAM_018040__   1147 TATGAAGAGACAATTGATTATGACATCATGGCAAAAGTGACGTGGAGCAG   1196

BSNT_02947___   1119 GTGGTTTCGGCCGCTTGCAATTATTTACGAATGGTTCAGCAGAAGAATCG   1168
                     .||||||||.|||.|.||.....|.|||||...|||||||||||||...|
RBAM_018040__   1197 ATGGTTTCGTCCGTTCGCGCGCGTGTACGAGCCGTTCAGCAGAAGAGCGG   1246

BSNT_02947___   1169 GCCAAATACATCTTTCGACGAACCCTGACTGGTATAGGATGTACAGCAAG   1218
                     |.||.||.||.||.||.|.|||.||.||.|||||||..|||.||||..|.
RBAM_018040__   1247 GGCAGATTCACCTGTCCATGAATCCGGATTGGTATATCATGCACAGTGAT   1296

BSNT_02947___   1219 ATAAAAGGTGTTCATTCGAAAAAAGACGGAAGGGAAAGAGTACGTGCCTG   1268
                     ||.|.|||.|||.|.||..|.||||||||.||..|||..||.|||||.||
RBAM_018040__   1297 ATTATAGGAGTTGACTCTGACAAAGACGGCAGAAAAAATGTCCGTGCGTG   1346

BSNT_02947___   1269 GATTAGAACAAATGAAAAAAACGAAACCATTTTTACCGCTCTTTATTCAG   1318
                     |||.||||||||||||||..|.||||||.|||||||.||.||.|||||||
RBAM_018040__   1347 GATCAGAACAAATGAAAAGCAGGAAACCGTTTTTACTGCGCTGTATTCAG   1396

BSNT_02947___   1319 TGTATCGTTCAAATGGAGAGGGGTATATGAATATTTCTTTACCGCTTCCA   1368
                     .|||..|..||||.||.||.||.||.||||||||.|||.|.|||||.||.
RBAM_018040__   1397 CGTACAGGGCAAAAGGGGAAGGATACATGAATATCTCTCTTCCGCTGCCG   1446

BSNT_02947___   1369 TTCAGCAGCATGACAGGTATTTTAAAACCATATCATCATCAGGAGAAGCT   1418
                     |.|.||...|||||.||.|||||||||||.|||...|.|.||.|.||.||
RBAM_018040__   1447 TACGGCCAAATGACGGGCATTTTAAAACCTTATGCGCGTAAGCAAAATCT   1496

BSNT_02947___   1419 GGTTTTAACAAGCAGGCGGAGAAAAAGCAGAGCGGGTGATGAGGGGATTT   1468
                     .|||||.||||||||.|||.||||||||.|||||||||||||.|||||||
RBAM_018040__   1497 TGTTTTGACAAGCAGACGGCGAAAAAGCGGAGCGGGTGATGAAGGGATTT   1546

BSNT_02947___   1469 ATCTGCAAACAAGAGCGGGAACTTGTCCGCTTCCTTTATCTGAAACCTTT   1518
                     |||||||.||.|.|..|||.||.||||..|||||..|..|.||.||.|||
RBAM_018040__   1547 ATCTGCAGACGAAATGGGGGACGTGTCATCTTCCGCTGGCAGAGACATTT   1596

BSNT_02947___   1519 CTGAT--------AGAAGCTGCACATGACAACAAATTAACGGCTGTTCAT   1560
                     ||.||        |||    ||    ||.|.||...|.|.|||.||||||
RBAM_018040__   1597 CTTATTTCAGCCCAGA----GC----GAAACCAGCCTGAAGGCCGTTCAT   1638

BSNT_02947___   1561 CATATGTGGCTGTTTGGAATAAAATTTCTAACTGTTCATTACAGCATTAC   1610
                     ||||||||||||||.|||.|.||||||.|||||||.|||||..|.||.||
RBAM_018040__   1639 CATATGTGGCTGTTCGGACTGAAATTTTTAACTGTGCATTATCGGATCAC   1688

BSNT_02947___   1611 ACAT---------ATTAACC--AGCCTATTGAAAGAACCTAA   1641
                     .|||         ..|||||  |||      |||.||     
RBAM_018040__   1689 TCATGCTTCCGCAGGTAACCGAAGC------AAATAA-----   1719


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