Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04397 and RBAM_018240
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:51
# Commandline: needle
# -asequence dna-align/BSNT_04397___bioI.1.9828.seq
# -bsequence dna-align/RBAM_018240___bioI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04397___bioI-RBAM_018240___bioI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04397___bioI-RBAM_018240___bioI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04397___bioI
# 2: RBAM_018240___bioI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 834/1310 (63.7%)
# Similarity: 834/1310 (63.7%)
# Gaps: 190/1310 (14.5%)
# Score: 2410.5
#
#
#=======================================
BSNT_04397___ 1 ATGA---------TGTCGATTGCTTTTATTTTTGAACAGAAAGGAGAAAA 41
|||| |.|||||||| |.|
RBAM_018240__ 1 ATGACGGCGGACCTATCGATTGC------------------------ACA 26
BSNT_04397___ 42 TCACGTGACAATTGCATCGTCAACTGCAT----CTTCTGAGTTTTT-GAA 86
|| |||| .||.||| .||| |.|||||| |||
RBAM_018240__ 27 TC---------------CGTC-TCTCCATGCGGATTC-GGGTTTTTGGAA 59
BSNT_04397___ 87 AAACCCATATTCTTTTTACGACACATTGCGAGCTGTTCATCCTATCTATA 136
..||||.||..|.|||||.||||.|.|||||.|..||.|||||.|.||||
RBAM_018240__ 60 TGACCCTTACCCGTTTTATGACAAACTGCGATCCATTGATCCTGTTTATA 109
BSNT_04397___ 137 AAGGGAGTTTCTTAAAATACCCGGGCTGGTATGTCACAGGATATGAAGAA 186
||||.|...|.||||||||.|||||||||||||||||.||.||..|||||
RBAM_018240__ 110 AAGGAACCGTATTAAAATATCCGGGCTGGTATGTCACCGGGTACAAAGAA 159
BSNT_04397___ 187 ACGGCTGCTATTTTGAAAG--ATGCGAGATTCAAAGTCCGCACCCCGCTG 234
.||||.||.|||.|||||| ||.| |.||.|||..|||||..||.||.
RBAM_018240__ 160 GCGGCAGCGATTCTGAAAGACATTC--GGTTTAAAAACCGCATTCCTCTT 207
BSNT_04397___ 235 CCTGAGAGC-TCAACCAAATATCAGGACCTTTCACATGTGCAAAATCAAA 283
||.|| ||| |||||.||||||||..|.||.||.|||.|.||..|..|.|
RBAM_018240__ 208 CCGGA-AGCTTCAACGAAATATCAAAATCTATCGCATATCCAGCACGATA 256
BSNT_04397___ 284 TGATGCTGTTTCAGAACCAGCCTGATCATAGACGATTGCGGACGCTTGCC 333
||.||.|.|||.|.||.||..|.||.||||..||..||||||.||||
RBAM_018240__ 257 TGCTGTTATTTAAAAATCAATCAGACCATAAGCGGATGCGGATGCTT--- 303
BSNT_04397___ 334 AGCGG---AGCGTTTA-CGCCGAGAGCGACAGAGAGTTATCA----GCC- 374
|.||| ||..|||| |||..||| ||.|.|| |||| |||
RBAM_018240__ 304 ATCGGTAAAGAATTTACCGCAAAGA-CGGCGGA-----ATCACTTCGCCC 347
BSNT_04397___ 375 --GTATATCATTGAAACTGTCCACCAATTGCTTGATCAAGTGCAAGGTGA 422
||||| |..|||||.||.||..|.|||.|.||||||||.||| .|.|
RBAM_018240__ 348 TTGTATA--AAAGAAACGGTTCATGACTTGTTGGATCAAGTCCAA-ATCA 394
BSNT_04397___ 423 AAAAAA--GATGGAGGTCATTTCGGACTTTGCTTTTCCTTTAGCAAGCTT 470
|||||| | .|||..|..||||.||.|||||.|||||.||.||||||.|
RBAM_018240__ 395 AAAAAACCG-CGGACCTTGTTTCAGAGTTTGCCTTTCCATTGGCAAGCCT 443
BSNT_04397___ 471 TGTCATCGCTAACATTATAGGTGTACCG---GAGGA-AGATAGGGAGCAA 516
|.||||.||..|.||..|.||.||.||| ||||| |||| |.|||
RBAM_018240__ 444 TATCATTGCGGAGATACTCGGAGTGCCGAAAGAGGAGAGAT----ATCAA 489
BSNT_04397___ 517 TTAAAGGAGTGGGCTGCGAGTC-TCATTCAAACGATTGATTTTACCCGGT 565
||.|...|.|||.|.|| ||.| |||||||..|.||||||.|||||||.|
RBAM_018240__ 490 TTCAGACAATGGACGGC-AGACGTCATTCAGGCCATTGATCTTACCCGAT 538
BSNT_04397___ 566 CAAGAAAGGCATTA-ACAGAGGGCAATC-ATATGGCTGTGCAGGCT-ATG 612
||||||||.|.||| .|||| ||||.| |.|..||.| ||||||| |.|
RBAM_018240__ 539 CAAGAAAGACGTTAGTCAGA--GCAAGCGACACCGCAG-GCAGGCTGACG 585
BSNT_04397___ 613 GCATATTTCAAAGAGCTGATTCAAAAGAGAAAACGC-CACCCTCAACAGG 661
.|||||||||.|||..|||||||.|||.|..|| || ||||||||.||.|
RBAM_018240__ 586 TCATATTTCAGAGATTTGATTCACAAGCGGGAA-GCGCACCCTCAGCAAG 634
BSNT_04397___ 662 ATATGATCAGCATGCTCTTGAAGG-GGAAAGAAAATGATAAGCTGACGGA 710
|..|||||||||.|.|..|.|.|| |||| .||||..|..|
RBAM_018240__ 635 ACTTGATCAGCAGGTTTATTATGGAGGAA----------CAGCTTTCAAA 674
BSNT_04397___ 711 AGAGGAGG----CGGCATCTACGTGCATATTGCTGGCGATCGCCGGACAT 756
||||||.| || |.||.||.||.||.||.|..||.||||||||.
RBAM_018240__ 675 AGAGGAAGTGCTCG----CGACATGTATCTTACTTGTCATAGCCGGACAC 720
BSNT_04397___ 757 GAGACAACGGTTAATCTCATCAGCAA-------TTCAGTCCTTTGTCTGC 799
|||||.|||||.||.|||||.||||| || |.||||.|
RBAM_018240__ 721 GAGACGACGGTAAACCTCATAAGCAACGGTGTGTT---TACTTTAT---- 763
BSNT_04397___ 800 TGCAGCATCCAGAACAGCTTTTGAA----ACTGAGAGAAAATCCAGATCT 845
||.|.||.||.||||||||| | ||||||||||||.||....||
RBAM_018240__ 764 TGAAACACCCTGAACAGCTT----AGCGCACTGAGAGAAAACCCCTCGCT 809
BSNT_04397___ 846 TATTGGTACCGCAGTTGAGGAATGTTTACGCTATGAAAGCCCCACGCAAA 895
|||||..||.|||||||||||||||.|.|||||.||.||||||.||||..
RBAM_018240__ 810 TATTGAAACTGCAGTTGAGGAATGTCTGCGCTACGACAGCCCCGCGCAGC 859
BSNT_04397___ 896 TGACAGCCAGAGTTGCGTCAGAGGATATTGACATCAGCGGGGTGACGATC 945
||||.||..|....||.|||||.||....||.||.|..|||..|||.||.
RBAM_018240__ 860 TGACGGCACGCACCGCCTCAGAAGACTGCGAAATAAATGGGAAGACCATA 909
BSNT_04397___ 946 CGTCAAGGAGAGCAAGTCTATCTTTTGTTAGGAGCGGCTAATCGAGACCC 995
....||||||||||.||.|||.|..|.|||||.||.||.|||||.||.||
RBAM_018240__ 910 AAAAAAGGAGAGCAGGTATATATCCTTTTAGGGGCAGCCAATCGCGATCC 959
BSNT_04397___ 996 TAGCATATTC-ACGAACCCC----GATGTCTTCGATATTACGAGAAGTCC 1040
.||||||||| |..||||.| .||| |||||....||||..||
RBAM_018240__ 960 AAGCATATTCGATCAACCTCACAAAATG-----GATATCCAAAGAAAACC 1004
BSNT_04397___ 1041 TAATCCGCACCTTTCATTCGG--GCATGGCCATCATGTTTGCTTAGGGTC 1088
.||||||||.|||.||||||| |.|..||| |||.|||||.||||.||
RBAM_018240__ 1005 GAATCCGCATCTTGCATTCGGAAGGAACGCC--CATTTTTGCATAGGCTC 1052
BSNT_04397___ 1089 CTCGCTGGCACGATTAGAAGCGCAAATTGCGATTAACAC-CTTTCTGCAG 1137
|||..|.||.||..|.|||||.||||||||.|||..||| ||.|.|| ||
RBAM_018240__ 1053 CTCATTAGCGCGCATCGAAGCACAAATTGCAATTCTCACACTGTTTG-AG 1101
BSNT_04397___ 1138 CGAATGCCCAGCCTTAAGCT----------CGCGGATTTTGAATGGCGGT 1177
||.|||||.|..|||..||| ||| .||||| |
RBAM_018240__ 1102 CGGATGCCTAAGCTTCGGCTGGCTGCACACCGC----CTTGAA------T 1141
BSNT_04397___ 1178 ATCGGCCGCTTTTTGGATTTCGGGCGCTTGAGGAGCTGCCGG-TGACTTT 1226
|.||...|||..||||.|||.||.||||..|.|||||.|||| ||.|.||
RBAM_018240__ 1142 ACCGCAAGCTCATTGGTTTTAGGTCGCTCAAAGAGCTCCCGGTTGTCATT 1191
BSNT_04397___ 1227 ---TGAATAA 1233
|||
RBAM_018240__ 1192 GGCTGA---- 1197
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