Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03019 and RBAM_018370
See
Amino acid alignment /
Visit
BSNT_03019 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03019___yngH.1.9828.seq
# -bsequence dna-align/RBAM_018370___yngH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03019___yngH-RBAM_018370___yngH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03019___yngH-RBAM_018370___yngH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03019___yngH
# 2: RBAM_018370___yngH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1427
# Identity: 961/1427 (67.3%)
# Similarity: 961/1427 (67.3%)
# Gaps: 169/1427 (11.8%)
# Score: 3201.5
#
#
#=======================================
BSNT_03019___ 1 ATGTTTACAAAAGTACTGATCGCCAACCGCGGAGAAATTGCAATGAGAAT 50
.||||||.||||||.|||||.||||||.|.||||||||.||..|..||||
RBAM_018370__ 1 TTGTTTAAAAAAGTCCTGATTGCCAACAGAGGAGAAATCGCCTTACGAAT 50
BSNT_03019___ 51 TATCCGAACATGCAGCCGTCTCGGCAT----TAAAACGGTTGCGGTTTAT 96
||||||.||.||||..||||||||||| | |||..||.||.|||
RBAM_018370__ 51 TATCCGCACCTGCAAACGTCTCGGCATCCCCT----CGGCAGCTGTGTAT 96
BSNT_03019___ 97 TCAGAAGCCGACAAGGACGCGCTCCATACAAAAGCCGCTACAGAGGCTTA 146
||||||||||||..|||||||||.|||..||||||.|||...|||||.||
RBAM_018370__ 97 TCAGAAGCCGACCGGGACGCGCTGCATGTAAAAGCGGCTGATGAGGCCTA 146
BSNT_03019___ 147 TTTGATCGGAGAATCGAGAGTCAGTGAAAGTTATTTAAATATAGAGAGAA 196
|..||||||..||||||||||.|.||||||.||||||.||||.||.||||
RBAM_018370__ 147 TCCGATCGGTAAATCGAGAGTAAATGAAAGCTATTTACATATCGACAGAA 196
BSNT_03019___ 197 TCATA-AAGACGGCGAAAAAAGCAAAT--------GCCGACGCGATCCAC 237
||||| |||.|| .||||| ||.|||||.||.||.
RBAM_018370__ 197 TCATAGAAGCCG---------CCAAATCCGCCGGAGCGGACGCCATTCAT 237
BSNT_03019___ 238 CCGGGATATGGATTGTTATCAGAAAACAGTCGGTTCGCTGAACGCTGC-- 285
|||||.||.||..|..|.|||||||||||.|.||||||.|||||||||
RBAM_018370__ 238 CCGGGCTACGGGCTTCTGTCAGAAAACAGCCTGTTCGCCGAACGCTGCCG 287
BSNT_03019___ 286 AAGCAAGAAAACATCGTGTTTATCGGACCTTCCCCTGATATCATCGCAAA 335
|| |||||.|.|||...||||||||.||..||..||||||||||||.||
RBAM_018370__ 288 AA--AAGAACAAATCACATTTATCGGTCCGCCCGGTGATATCATCGCCAA 335
BSNT_03019___ 336 GATGGGCAGCAAAATTGAAGCGCGAAAAGCAATGGAGGCTGCAGGTGTCC 385
||||||||||||.||.|||||.||||||.|.|||.|....|||...||||
RBAM_018370__ 336 GATGGGCAGCAAGATAGAAGCCCGAAAAACGATGCAAAAAGCAAAGGTCC 385
BSNT_03019___ 386 CTGTGGTACCGGGCGTTTCTGA---AT--CCCTCGGAGATATAGAGGCAG 430
|..|.||.||.||.|||||.|| || ||| |||.|..|..|.|
RBAM_018370__ 386 CGATCGTTCCCGGTGTTTCAGAGCCATTGCCC-----GATGTTCACTCCG 430
BSNT_03019___ 431 CCT--GCCGCACCGCATGTCAAATCGGCTATCCTGTCATGCTGAAAGCTT 478
||| ||||.|.|.|.||.| |||||.|.|||.||||||||||||||.|
RBAM_018370__ 431 CCTTAGCCGAAGCCCGTGCC--ATCGGTTTTCCGGTCATGCTGAAAGCGT 478
BSNT_03019___ 479 CAGCGGGCGGAGGGGGCATCGGAATGCAG--CGTGTTGAAAATGAAGAAG 526
|.||.||.|||||.||.|||||.|||||| ||| |.||..|||||
RBAM_018370__ 479 CCGCAGGAGGAGGCGGAATCGGCATGCAGATCGT-----ACATTCAGAAG 523
BSNT_03019___ 527 CATTAAAA-------AAAGCGTACGAGGGAAACAAAAAGCGCGCAGCAGA 569
||.| |||||||..||.||.||..|||||||.||.||...
RBAM_018370__ 524 ----AAGAGCTGGCCAAAGCGTTTGAAGGCAATCAAAAGCGGGCCGCCTC 569
BSNT_03019___ 570 TTTTTTCGGTGACGGGTCGATGTATATAGAAAAAGTTATTGAACATGCGC 619
.|||||.||.|||||..|.||||||||.|||||.||.||||||.||||.|
RBAM_018370__ 570 CTTTTTTGGAGACGGCGCAATGTATATGGAAAAGGTCATTGAAAATGCCC 619
BSNT_03019___ 620 GTCACATCGAGGTTCAGCTTTTGGCTGATCAACACGGCCATACAGTACAT 669
||||.||.||..|||||.|..|.||.|||.....||||.|.||.||.|||
RBAM_018370__ 620 GTCATATTGAAATTCAGATACTCGCAGATTCTTTCGGCAACACCGTTCAT 669
BSNT_03019___ 670 CTGTTTGAACGTGATTGCTCTGTTCAGAGGCGCCACCAAAAAGTCATTGA 719
||||||||||||||.||.||.||.||.|||||||||||||||||.||.||
RBAM_018370__ 670 CTGTTTGAACGTGACTGTTCAGTACAAAGGCGCCACCAAAAAGTGATAGA 719
BSNT_03019___ 720 AGAAGCACCGTCTCCATTTGTAGACGATGAACTAAGA-ATGAAGA-TTGG 767
||||||.|||||.||.|||||.|||||||||.||||| | |||| |.||
RBAM_018370__ 720 AGAAGCGCCGTCGCCGTTTGTTGACGATGAATTAAGACA--AAGACTCGG 767
BSNT_03019___ 768 GCAAACAGCGGTAAAAGCAGCAAAGGCAATCGGCTATACGAACGCAGGCA 817
..||||.||..|.|||||.|||||..|.||||||||....||.|||||||
RBAM_018370__ 768 TGAAACCGCCATTAAAGCCGCAAAATCGATCGGCTACCAAAATGCAGGCA 817
BSNT_03019___ 818 CCATCGAATTCATAGTTGACCAGAAGCAAAATTTTTATTTCCTCGAAATG 867
|.||.|||||..|.||.|||.|.|||.||.|..|.|||||..|.||.|||
RBAM_018370__ 818 CAATAGAATTTCTCGTCGACGAAAAGAAACAAATCTATTTTTTAGAGATG 867
BSNT_03019___ 868 AATACGAGACTGCAAGTTGAACACCCCGTGACTGAAGAAATAACAGGCCT 917
||.||.||||||||.||.||.||.||.|||||.||||||||.|||||.||
RBAM_018370__ 868 AACACCAGACTGCAGGTGGAGCATCCGGTGACAGAAGAAATTACAGGACT 917
BSNT_03019___ 918 GGA-CTTAGTTGAGCAGCAGCTGCGGATTGCTGCGGGCCATACACTCACA 966
||| ||| ||.||..|.||||||...|||||.||.||.||..|.||..|.
RBAM_018370__ 918 GGATCTT-GTGGAAGAACAGCTGAAAATTGCCGCTGGGCAGGCGCTGCCT 966
BSNT_03019___ 967 TTCTCCCAAAAAGA---CATCCAACGGAACGGGCATGCGATAGAGGTTCG 1013
|||||.||.||||| ||.|||.|| |||.|||||||||||.||.||
RBAM_018370__ 967 TTCTCGCAGAAAGATATCAACCACCG---CGGTCATGCGATAGAAGTGCG 1013
BSNT_03019___ 1014 AATATACGCGGAAGATCCCAAGACCTTCTTCCCGTCACCAGGTACGATCA 1063
.||.||.|||||||||||....|||||.|.||||||.||.|||||.|||.
RBAM_018370__ 1014 GATCTATGCGGAAGATCCGGTCACCTTTTACCCGTCTCCCGGTACCATCT 1063
BSNT_03019___ 1064 C-------TGCGTTTT----CACTTCCTGACCAAAAAGGAGTCA----GA 1098
| |.|||||| ||| || |||| ||
RBAM_018370__ 1064 CGTCTTTTTCCGTTTTAAGACAC-------CC--------GTCAGTGCGA 1098
BSNT_03019___ 1099 CACGAATGTGCGGTAGCAAAAGACAGCACCGTTACCCCTTTTTATGACCC 1148
||||||||.||.||.|.|||.|..|||..|.||.|.||.|||||.||.||
RBAM_018370__ 1099 CACGAATGCGCCGTCGAAAAGGGAAGCGTCATTTCTCCGTTTTACGATCC 1148
BSNT_03019___ 1149 GATGATCGCTAAGATGATTGTCAAAGGCCAA-ACCAGAACAGAAGCAATT 1197
||||||.||.||.|||.|.||| |.|||.|| ||.||||.|.||||.|||
RBAM_018370__ 1149 GATGATTGCCAAAATGGTCGTC-ACGGCGAATACGAGAAAACAAGCCATT 1197
BSNT_03019___ 1198 GAAAAACTAGAGACATCGCTTCGCGACTATCGTGTAGAGGGAATCAAAAC 1247
|||.||||..|.||..|.|||.||||.||||.||||||.||.||.|||||
RBAM_018370__ 1198 GAACAACTGAAAACCGCCCTTGGCGAATATCATGTAGAAGGGATTAAAAC 1247
BSNT_03019___ 1248 AAATCTTCCGCTTCT-------------CATACA---------------G 1269
.||..|||||||.|| |||.|| |
RBAM_018370__ 1248 CAACATTCCGCTGCTGACAAAAATTGCCCATTCAGAAGTGTTTGAAAAGG 1297
BSNT_03019___ 1270 GCTGCGGCAACAAAGGCATTT--------AAAGA---AGGGGATGTCACG 1308
|| |.||||||||..|..||| ||.|| |||||..|||| .
RBAM_018370__ 1298 GC-GAGGCAACAACCGGTTTTTTACAAACAATGAACGAGGGGGCGTCA-A 1345
BSNT_03019___ 1309 ACTGACTTTTTGAAACAACACCTATAA 1335
|.|||
RBAM_018370__ 1346 AATGA---------------------- 1350
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.