Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03021 and RBAM_018390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03021___yngJ.1.9828.seq
# -bsequence dna-align/RBAM_018390___yngJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03021___yngJ-RBAM_018390___yngJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03021___yngJ-RBAM_018390___yngJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03021___yngJ
# 2: RBAM_018390___yngJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1162
# Identity: 882/1162 (75.9%)
# Similarity: 882/1162 (75.9%)
# Gaps: 38/1162 ( 3.3%)
# Score: 3280.5
#
#
#=======================================
BSNT_03021___ 1 GTGAATTTTGAGCTGACAAAAGAACAACAAATGGTGCGTGAAATGGTAAA 50
.||||||||.|.||||||||||||||.||.||||||||.||||||||.|.
RBAM_018390__ 1 ATGAATTTTCAACTGACAAAAGAACAGCAGATGGTGCGCGAAATGGTCAG 50
BSNT_03021___ 51 AGATTTTGCGAAAAAAGAAATTGCTCCTCACGCTGAA----CAT---GTA 93
||||||.||.|||||.||||||||.|| ||| ||| ||.
RBAM_018390__ 51 AGATTTCGCCAAAAATGAAATTGCCCC-------GAAAGCCCATGAGGTT 93
BSNT_03021___ 94 GATCAAACAGGCGAGTTCCCGATGCAAACATTTGAAAAAATGGGTGAACT 143
||||||.|||.||..||||||||..|.||||||.|||||||.||.|||||
RBAM_018390__ 94 GATCAATCAGCCGTCTTCCCGATAGACACATTTAAAAAAATAGGCGAACT 143
BSNT_03021___ 144 CGGTCTGATGGGTATTCCATTTCCAGAAGAATATGGCGGATCTGGCGGTG 193
|||.|||.|.||.|||||.|||||.||||||||.|||||..|.|||||||
RBAM_018390__ 144 CGGGCTGCTCGGAATTCCGTTTCCGGAAGAATACGGCGGGGCGGGCGGTG 193
BSNT_03021___ 194 ATACGATTTCATATGCCTTAGCGGTTGAAGAAGTCGGCAAAGCCTGCGGC 243
|.||.|||||||||||...||||||.||||||.||||.||||||||||||
RBAM_018390__ 194 ACACCATTTCATATGCAGCAGCGGTCGAAGAAATCGGAAAAGCCTGCGGC 243
BSNT_03021___ 244 AGTACTGGATTAAGCTATGCTGCAGCGGTCTCGCTAGGCGCAAGCCCTCT 293
||.||.||..|.|||||.||.|||||.||.||.||.||.||||||||..|
RBAM_018390__ 244 AGCACGGGGCTGAGCTACGCGGCAGCCGTGTCACTCGGTGCAAGCCCATT 293
BSNT_03021___ 294 TTACTACTTCGGAACAGAAGAGCAAAAAC-AGACGCATTTGACGCCGCTG 342
.|||||.|||||.||.|||.|||||||.| ||| .|||.|.|..|||||.
RBAM_018390__ 294 ATACTATTTCGGTACTGAACAGCAAAAGCAAGA-ACATCTTATTCCGCTT 342
BSNT_03021___ 343 GCTTCAGGCACAGCACTCGGATCATTCGGCCTGACGGAGCCAAATGCCGG 392
|||||.||.|.|||.||||||||||||||.|||||||||||.||||||||
RBAM_018390__ 343 GCTTCGGGAAAAGCGCTCGGATCATTCGGGCTGACGGAGCCGAATGCCGG 392
BSNT_03021___ 393 CTCAGATGCAGGAGGCACTCAAACAAAAGC---GATTTCAAA----TGGT 435
.||||||||.||.||.||.||.|||||||| || ||| .|||
RBAM_018390__ 393 TTCAGATGCCGGCGGAACCCAGACAAAAGCCGAGA----AAAAGGGCGGT 438
BSNT_03021___ 436 GACGAGTATGTAATCAACGGCGAAAAGTGCTGGATCACTAATGCAAGCTA 485
||| |||||.||.|||||.||.||.|||||||||||.||.||||..||
RBAM_018390__ 439 GAC---TATGTGATAAACGGAGAGAAATGCTGGATCACAAACGCAAATTA 485
BSNT_03021___ 486 CGCACGCACAGTTATTGTAACCGCCGTAACAGGCAAAAACAAAGACGGAA 535
|||.|||||.||.|||||.||||||||.||.||.||.|||...|.|||||
RBAM_018390__ 486 CGCCCGCACGGTCATTGTCACCGCCGTTACGGGAAAGAACTCCGCCGGAA 535
BSNT_03021___ 536 AAAACATCATCTCCGCATTAATCGTGCCAACTGACACACCAGGACTTACG 585
||...|||||.||.||..|.|||||.||.||.||||||||.|||.|||||
RBAM_018390__ 536 AACCGATCATTTCAGCTCTCATCGTCCCGACAGACACACCGGGATTTACG 585
BSNT_03021___ 586 ATTACGAGCCCGTACGATAAAATGGGCGTCCGCGGTTCGAATACAGCGGA 635
||.||.|..||||||||.||.|||||.||..|.||.|||.||||.||.||
RBAM_018390__ 586 ATCACAAATCCGTACGACAAGATGGGTGTGAGAGGGTCGGATACGGCCGA 635
BSNT_03021___ 636 AATTTTGCTTGAGGATGTAAGAGTGCCTGCGGCCAACTTACTTGGCGATC 685
..||.||||.||||||||.||.||||||||.|..|||.|.||.||.||||
RBAM_018390__ 636 GCTTGTGCTGGAGGATGTCAGGGTGCCTGCCGATAACCTGCTCGGTGATC 685
BSNT_03021___ 686 CAACAAAAGGGTTTAAACAGTTTCTATATACGCTGGACGGAGGGCGAATC 735
|...||||||.||||||||.|||.|||||||..|.|||||.|||||.|||
RBAM_018390__ 686 CTGAAAAAGGTTTTAAACAATTTTTATATACATTAGACGGCGGGCGGATC 735
BSNT_03021___ 736 TCCATCGCTGCTCTTGCAGTCGGCATTGCCCAAGCGGCCCTTGACGCATC 785
||.||.||.||.||.||.|||||.||.||.||||..||.||.||.||.||
RBAM_018390__ 736 TCGATTGCGGCACTGGCTGTCGGTATCGCTCAAGGCGCACTGGAGGCGTC 785
BSNT_03021___ 786 ATTGGCATATGCGAAAGAACGAAAGCAGTTTGGACAG-CCGATTTCTTCC 834
..||.||||||||||.|||||.||||||||.|| ||| |||||.||.||.
RBAM_018390__ 786 GCTGTCATATGCGAAGGAACGCAAGCAGTTCGG-CAGTCCGATATCGTCA 834
BSNT_03021___ 835 TTTCAAGCGATTCAATTTAAGCTTGCTGACATGGCGATGGAAATTGATCT 884
||||||||.||||||||||||||.||.||.|||||||||||||||||.||
RBAM_018390__ 835 TTTCAAGCCATTCAATTTAAGCTGGCCGATATGGCGATGGAAATTGACCT 884
BSNT_03021___ 885 GGCACGGCAAATGGTGTTAAAAGCCGCCTGGCTGAAAGACCATAACCACC 934
.||..|.||.||||||.|.|||||.||.||||||||.||.||.||||..|
RBAM_018390__ 885 TGCCAGACAGATGGTGCTTAAAGCGGCATGGCTGAAGGATCAAAACCTGC 934
BSNT_03021___ 935 CGTTCACCAAAGAAGCGGCGTACGCCAAGCTATTCGCATCTGAAATGG-C 983
|.||.||.||||||||.||.|.|||.|||||.|..||.|||||||||| |
RBAM_018390__ 935 CATTTACGAAAGAAGCTGCATTCGCTAAGCTCTATGCTTCTGAAATGGCC 984
BSNT_03021___ 984 GACAAGAGCTTGCAATCAAGCCATTCAAATCCATGGAGGTTCAGGCTATA 1033
|.| |||.|.|||..|||.|||||.|||||.|||||.|||||.||.||||
RBAM_018390__ 985 GTC-AGAACGTGCCTTCAGGCCATCCAAATTCATGGCGGTTCCGGTTATA 1033
BSNT_03021___ 1034 TGAAAGAGTATGGGGTG--GAACGGATGCTGCGGGATGCAAAATTAATGG 1081
||||.|| |||.|||| |||||.|||||.||.||.|||||..|.||||
RBAM_018390__ 1034 TGAAGGA--ATGCGGTGTCGAACGTATGCTTCGTGACGCAAAGCTGATGG 1081
BSNT_03021___ 1082 AAATCGGTGAAGGCACATCTGAAATTCAGCGTCTCGTGATCGCCAGACAG 1131
|.||.||.|||||.||.||.||||||||..|..|.||.|||||.||||||
RBAM_018390__ 1082 AGATTGGCGAAGGAACGTCAGAAATTCAAAGAATGGTCATCGCAAGACAG 1131
BSNT_03021___ 1132 CTTTTAAAATAA 1143
|||||.||.|.|
RBAM_018390__ 1132 CTTTTGAAGTGA 1143
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