Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03040 and RBAM_018490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03040___yoeA.1.9828.seq
# -bsequence dna-align/RBAM_018490___yoeA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03040___yoeA-RBAM_018490___yoeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03040___yoeA-RBAM_018490___yoeA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03040___yoeA
# 2: RBAM_018490___yoeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1408
# Identity: 1041/1408 (73.9%)
# Similarity: 1041/1408 (73.9%)
# Gaps: 35/1408 ( 2.5%)
# Score: 3736.0
#
#
#=======================================
BSNT_03040___ 1 ATGGAAACATCACAAGAACCTCTTGTAACTCAAAAGAAA-AGCAAA---- 45
||||| |..||||||.|.|.| ||||| |||..|
RBAM_018490__ 1 ATGGA---AGTACAAGATCATTT-----------AGAAACAGCGGAAGGC 36
BSNT_03040___ 46 -----CCA-TCAGTTTGGCGGTCGATGTCACTCTTTTTAGTGCCGCTTCT 89
||| |||||.|||||.|||||||||||.||||||||||||||.||
RBAM_018490__ 37 CGCGGCCAGTCAGTCTGGCGATCGATGTCACTGTTTTTAGTGCCGCTGCT 86
BSNT_03040___ 90 GCTGAGCAATGTGCTGCAATCAGTCGGCCAGCTAGTCGGGATGATGGCTG 139
..|.||||||||..|||||||.||||||||..|.|||||.|||.|...||
RBAM_018490__ 87 TTTAAGCAATGTATTGCAATCTGTCGGCCAATTGGTCGGAATGGTATTTG 136
BSNT_03040___ 140 TAGGCAGATGGCTTGGTGTTGATGCAGTGGCAGCTGTATCATCCTTTTTC 189
|.||.||.|||||.||.||.|||||..|.||.||.|||||.||.|||||.
RBAM_018490__ 137 TCGGAAGGTGGCTCGGAGTCGATGCGCTTGCCGCCGTATCGTCTTTTTTT 186
BSNT_03040___ 190 CCGTTATTTTTTCTTTTAATCTCATTTACGATTGGGATCGGTTCAGGTAG 239
|||.|.||||||||..|.|||||.||||||||.||.||||||||.||.||
RBAM_018490__ 187 CCGCTGTTTTTTCTGCTGATCTCCTTTACGATCGGAATCGGTTCGGGAAG 236
BSNT_03040___ 240 TTCGATTCTGATCGGACAAGCTTACGGAGCGAAAAATGAGGAACGGCTAA 289
|||.|||||||||||.||.||||||||.||||||||.||.||..||.|.|
RBAM_018490__ 237 TTCCATTCTGATCGGGCAGGCTTACGGCGCGAAAAACGAAGAGAGGATGA 286
BSNT_03040___ 290 AGGCTGTTGTCGGGACGACACTCACGTTTACATTTTTATTAGGCGTTGTG 339
||||..|||||||.||.|||||.||.|||||.|||.|..|.||.|||||.
RBAM_018490__ 287 AGGCGATTGTCGGCACTACACTGACTTTTACCTTTATGCTCGGTGTTGTT 336
BSNT_03040___ 340 TTAGCCGTTATCGGCAGTATTTTCAC-CTTGGATATCCTTCGTTTAATGG 388
.|.||.|||.||||||||.|.||.|| ||| |||||.||.||..|.||||
RBAM_018490__ 337 CTGGCAGTTGTCGGCAGTGTGTTTACGCTT-GATATTCTGCGGCTGATGG 385
BSNT_03040___ 389 GAACACCTGAAAATGTCATTCATGTCAGCG--CTAACTATGCACGTATTT 436
||||.||.|||||.||.||..|||||||.| |.| |||||.||.||||
RBAM_018490__ 386 GAACGCCGGAAAACGTAATAGATGTCAGTGTCCGA--TATGCGCGCATTT 433
BSNT_03040___ 437 TATTTTATGCTATGCCGTTTATGTTTTTATATTTTGCATATACTACCTTT 486
|.||||..||.||||||.|.|||||||||||||||||.|||||.||.|||
RBAM_018490__ 434 TGTTTTGCGCAATGCCGCTGATGTTTTTATATTTTGCGTATACGACATTT 483
BSNT_03040___ 487 TTGCGCGGAACAGGAGATTCCAAGACACCGTTTTATACGCTGATTGTGAG 536
||.||||||||.||||||||.|||||.||||||||||||.|.||.||.||
RBAM_018490__ 484 TTACGCGGAACGGGAGATTCAAAGACTCCGTTTTATACGTTAATCGTCAG 533
BSNT_03040___ 537 CACGGTCATCAACATCGCGCTTTTGCCTGTTTTAATCCTTGGCATGTTTG 586
.||.|||||.|||||||.|||||||||..|.||.||.||.||..|.||.|
RBAM_018490__ 534 TACAGTCATAAACATCGGGCTTTTGCCCTTATTGATTCTCGGGCTTTTCG 583
BSNT_03040___ 587 GTTTTCCGAAACTGGGCATATACGGCTCGGCATATGCAACTGTCATTTCC 636
|..|||||||..|.|||||.|||||.|||||.||||||||.||.|||||.
RBAM_018490__ 584 GACTTCCGAAGTTCGGCATTTACGGTTCGGCGTATGCAACCGTGATTTCA 633
BSNT_03040___ 637 ACGATTGCGACTTTTCTCGTGTTAATGGTGTATTTACGAAAGCGAAAACA 686
|..||.|.|||.|||.||||..|.|||||.|||||.||.||..|.|||||
RBAM_018490__ 634 AACATCGTGACATTTATCGTACTCATGGTTTATTTGCGGAAAAGGAAACA 683
BSNT_03040___ 687 CCCGCTGCAATTTGATAAAACAGTGCGTCGTTATTTGAAAATGGATAAGG 736
.||..||..|||||||...||.|.||..||||.|.|.||||||||.||..
RBAM_018490__ 684 TCCATTGGCATTTGATCGGACTGCGCTCCGTTCTCTTAAAATGGACAAAA 733
BSNT_03040___ 737 AACTGCTGGTTCTCCTGCTGCGTCTTGGGGTCCCAGCAAGCATCAATATG 786
|.|||||.|..||..|.||.|||||.||..|.||..|.||||||||||||
RBAM_018490__ 734 AGCTGCTCGCGCTTTTACTCCGTCTCGGTATTCCGTCGAGCATCAATATG 783
BSNT_03040___ 787 ATTCTTGTCTCATTATCAGAGATAGCGGTTATTTCATTCGTCAATCATTA 836
|||||.||.|||.|.||.||.||.|||||.||||||||.|||||||||||
RBAM_018490__ 784 ATTCTCGTGTCACTTTCTGAAATTGCGGTCATTTCATTTGTCAATCATTA 833
BSNT_03040___ 837 CGGCTCTAATGCAACAGCTGCATACGGAGTGGTCAACCAGGTGGCCAGCT 886
|||.||.||.||.||.|||||.|||||.||.||||||||.|||||.||.|
RBAM_018490__ 834 CGGATCAAACGCGACGGCTGCTTACGGGGTCGTCAACCAAGTGGCGAGTT 883
BSNT_03040___ 887 ATGTACAGATGCCGGCCGTCAGCCTTGGTATTGCGGTTTCTATTTTCGCT 936
||||.|||||||||||.||.|||||.|||||.||.|||||.|||||.||.
RBAM_018490__ 884 ATGTGCAGATGCCGGCGGTAAGCCTCGGTATCGCCGTTTCCATTTTTGCC 933
BSNT_03040___ 937 GCGCAATCGATCGGGGCAAACGAGTTTGACC-GCTTAAAGCAGGTCATTC 985
||.|||||.||.||.||.||..|.||.|.|| |||.||| ||||||||..
RBAM_018490__ 934 GCCCAATCCATTGGCGCCAATCAATTCGGCCGGCTGAAA-CAGGTCATCA 982
BSNT_03040___ 986 GCGTGGGGATTTGGCTGAATTATATCATTGGCGGCGTACTGATCATACTG 1035
..||.||.||..|.|||||||||.|.||.|||||.||..||||..|.|||
RBAM_018490__ 983 AAGTCGGCATCGGCCTGAATTATTTGATCGGCGGGGTTTTGATTGTGCTG 1032
BSNT_03040___ 1036 ATCTATGTTTTTTCACATCAGAT-TTTGTCGTTATTTTTAACCGAGCAAG 1084
||.|||...||.||.|..||||| .||| |.||.||||||||.||.||.|
RBAM_018490__ 1033 ATTTATACCTTCTCCCGGCAGATACTTG-CTTTGTTTTTAACAGATCAGG 1081
BSNT_03040___ 1085 AGACGCTTTACATTGCACACCGTCTTTTGATGATTACATTGTGGAGTTAT 1134
|.|||||..|||||||.|.|..|||..|.||||||||..|.|||||.|||
RBAM_018490__ 1082 ACACGCTCCACATTGCCCGCAATCTGATTATGATTACCCTTTGGAGCTAT 1131
BSNT_03040___ 1135 TTGCTGTTTGGAAATGCCCAAATTATTTCTGCAACGATGCGGGCAAGCGG 1184
|||.|.||.||..||||.||.||..||||.||||||||||||||.|||||
RBAM_018490__ 1132 TTGATTTTCGGTCATGCTCAGATCGTTTCAGCAACGATGCGGGCGAGCGG 1181
BSNT_03040___ 1185 AACAGTTTTATGGCCGACCGTCATCAGTATTTTTGCAATCTGGGGAGTAG 1234
.||.||.|||||||||||..|.|||||.||||||||.||.||||||.|.|
RBAM_018490__ 1182 TACGGTGTTATGGCCGACGATTATCAGCATTTTTGCGATTTGGGGAATTG 1231
BSNT_03040___ 1235 AGGTGCCTGTCGCTTTCGTCCTTTCTCACTATACAAAGCTTGAAATACTC 1284
|.||||||||.||.||..|.||||||||.|||||.||.||.|..||.|||
RBAM_018490__ 1232 AAGTGCCTGTGGCCTTTATTCTTTCTCATTATACGAATCTCGGCATTCTC 1281
BSNT_03040___ 1285 GGCGTCTGGGTTGGTTATCCAGCTGCGTTTGCCGTCAGCTTGCTGTTGAT 1334
|||.|.|||||.||||||||.||.||.||||.|||||||.|||||.||..
RBAM_018490__ 1282 GGCATTTGGGTCGGTTATCCGGCGGCTTTTGTCGTCAGCCTGCTGCTGCA 1331
BSNT_03040___ 1335 TTATGGGTATTATCAATTCGTCTGGAAAAAGAAACAAATCACACGTCTCA 1384
.||.||.|||||.|..||.||.|||||.||.|||||.|||||.||.||.|
RBAM_018490__ 1332 ATACGGATATTACCGGTTTGTATGGAAGAAAAAACAGATCACCCGGCTGA 1381
BSNT_03040___ 1385 TCCAATAG 1392
|.|||||.
RBAM_018490__ 1382 TTCAATAA 1389
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