Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03051 and RBAM_018580
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03051___yofA.1.9828.seq
# -bsequence dna-align/RBAM_018580___yofA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03051___yofA-RBAM_018580___yofA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03051___yofA-RBAM_018580___yofA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03051___yofA
# 2: RBAM_018580___yofA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 578/945 (61.2%)
# Similarity: 578/945 (61.2%)
# Gaps: 165/945 (17.5%)
# Score: 1505.5
#
#
#=======================================
BSNT_03051___ 1 GTGGAAAGCGGAGATTTAAAGATTTTTCAGGCTGTTGCTCGCGAAGGAAG 50
.|||||||||||||.||||||||||||||||||||.||.|||.|||||||
RBAM_018580__ 1 ATGGAAAGCGGAGACTTAAAGATTTTTCAGGCTGTCGCCCGCAAAGGAAG 50
BSNT_03051___ 51 CATAACGAAAGCAGCCCAAATGCTGAATTATGTTCAGTCGAATGTGACAG 100
.||..|.||.||.||..|||..|||.||||||||||.||.|||||||||.
RBAM_018580__ 51 TATTTCAAAGGCGGCAGAAAGCCTGCATTATGTTCAATCAAATGTGACAA 100
BSNT_03051___ 101 CCAGAGTGCATAACCTTGA--GGAAGATTTGAATATCAGGCTTTTTCATC 148
.|||..|.||..|.||.|| ||.| |||..||...|| |||||||.|.|
RBAM_018580__ 101 ACAGGATTCAGCAGCTGGAACGGCA-ATTGCAAACACA-GCTTTTTTACC 148
BSNT_03051___ 149 GAACGAATCGGGGAATGAAGCTGACTGCTGCAGGAGAAAATCTT-TTACA 197
|.||.||||||||.||||.||||||..|||||||.||||| ||| ||..|
RBAM_018580__ 149 GCACAAATCGGGGGATGACGCTGACGCCTGCAGGTGAAAA-CTTATTGAA 197
BSNT_03051___ 198 ATATGCAGA---------TCAAGTATTATCGCTG--TTAGACCAAGCTGA 236
|.|.||||| ||| ||.|||| |.|| ||..|
RBAM_018580__ 198 AGACGCAGACAGAATCCTTCA------ATTGCTGCATGAG-----GCGCA 236
BSNT_03051___ 237 AAAATCGACCCGAATGA-GCAGGC-AACCAAAAGGGCCTTTGCGGATCGG 284
||||.|| .||.|.|| |||||| |.||.||.||.||..|.||.|||||
RBAM_018580__ 237 AAAAACG--GCGCAAGAGGCAGGCGATCCGAACGGCCCGCTTCGAATCGG 284
BSNT_03051___ 285 ATCACTGGAAACAATGGCGGTAAC---GCATCTGCCT------------G 319
.||.||.||||| |||||.|.| .|||||.||| |
RBAM_018580__ 285 TTCTCTTGAAAC---GGCGGCAGCCGTCCATCTCCCTCAATTTTTCACAG 331
BSNT_03051___ 320 AGCA-TGCAGCATCCTTCCTCAGGCGTTTTCCTGAAGT--GGATTTATCA 366
||.| |||||| ||.|..||..|||| .|.|.|.||.
RBAM_018580__ 332 AGTATTGCAGC-------------CGCTACCCGAAAGTACAGCTGTCTCT 368
BSNT_03051___ 367 GTGAACACAGCTGATACGCAT-CATTTGATTCA--ACAGGTTCTT-GATC 412
||.| ||.|.||||||.||| |.||.| |.|| ||| |||| .|..
RBAM_018580__ 369 GTCA--ACCGGTGATACACATACCTTAG-TGCAGCACA---TCTTACACT 412
BSNT_03051___ 413 ATAAAGTTGATGGCGCTTTTGTATATGGGCCGGTTGAGCACG-----CTG 457
||.|..|.||.|||||||||||.|||||.|||||.||..||| ||.
RBAM_018580__ 413 ATGAGCTGGACGGCGCTTTTGTTTATGGTCCGGTCGAATACGAAGATCTT 462
BSNT_03051___ 458 CAGTTAGACAACTCCATGTCTCCCATGATGAATTAGTTTTGATTTCATCA 507
.|| |||.||..|||.|..||.||.|||||.||.|||..||||
RBAM_018580__ 463 GAG-----CAAGTCGCTGTATTTCAAGAAGAATTGGTCTTGGCTTCA--- 504
BSNT_03051___ 508 CGAGAA--GGGACGGCAG-----AAGACATGCTTC-AGCAGCCGATGCTC 549
.|.|| ||||.||||| |||||.||.|.| || |||||||.||.
RBAM_018580__ 505 -AATAAGCGGGAAGGCAGTTTGCAAGACTTGTTGCGAG-AGCCGATTCTG 552
BSNT_03051___ 550 TTTTTTGGGGCTGGCTGTTCTCATCGTGACAGGGTCAAAAGATTACT--- 596
|.|||||..||.||||||||.||.||...||...|.||||...||||
RBAM_018580__ 553 TATTTTGCCGCGGGCTGTTCGCACCGCCGCAAAATAAAAAACATACTGAA 602
BSNT_03051___ 597 AGAGGAAGCAGGCATACACAATCAAAAAATCATAGAGTTTGGCACATTGG 646
|||.||||||| |||.|...||.||||||||.||.||.||.||.||||
RBAM_018580__ 603 AGAAGAAGCAG---TACCCGCACATAAAATCATTGAATTCGGTACGTTGG 649
BSNT_03051___ 647 AGGCTATTATAAAA------GGTGTTTCC--GCCGGGATGGG-------- 680
|.||.||||| |||| | ||.||||||||
RBAM_018580__ 650 AAGCCATTAT----TGGGGCGGTG----CAGGCGGGGATGGGGGTTTCCT 691
BSNT_03051___ 681 TACGGCGCTGCTTCCAAAGTCCGCTGTTGACTGCTCCGAGCATCGTACAA 730
|.|.|| ||||.||....|||||.|.|| .||..|.|| |.|.||
RBAM_018580__ 692 TTCTGC-CTGCATCAGCCGTCCGTTATT-----TTCAAAACA--GGAAAA 733
BSNT_03051___ 731 ATGTATGGATTCATCAATTGCC---AC-----CAGCATATCAAGACTTAG 772
||.|.|...|||||.|..|.|| || |.|.||||.|| ||.
RBAM_018580__ 734 ATCTTTTTCTTCATGAGCTTCCTGAACAGTTTCGGGATATGAA----TAT 779
BSNT_03051___ 773 AGATCGTC-TTTATATACAGGAAAGACTTTTTTATTACGAGTGCGTTT-C 820
| || ||.||.|||..||..||.||.|||.|.||....|||||| .
RBAM_018580__ 780 A-----TCATTCATCTACCAGAGTGATTTATTTTTGACATCGGCGTTTGA 824
BSNT_03051___ 821 AGACATTTCTTGATGAGA-TAAACGAAAT---GAA---AAGATGA 858
||| |.|.||..||| || ||||.|.|.| ||| |||||||
RBAM_018580__ 825 AGA-ACTGCTGAATG-GATTAAAAGCATTACCGAACGGAAGATGA 867
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