Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03052 and RBAM_018590

See Amino acid alignment / Visit BSNT_03052 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:55
# Commandline: needle
#    -asequence dna-align/BSNT_03052___yogA.1.9828.seq
#    -bsequence dna-align/RBAM_018590___yogA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03052___yogA-RBAM_018590___yogA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03052___yogA-RBAM_018590___yogA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03052___yogA
# 2: RBAM_018590___yogA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1055
# Identity:     684/1055 (64.8%)
# Similarity:   684/1055 (64.8%)
# Gaps:         136/1055 (12.9%)
# Score: 2081.0
# 
#
#=======================================

BSNT_03052___      1 ---ATGAAAGC---TGTAATTCACAACGGAAAAGCCGGTCTTCTGGGGTT     44
                        |||||.||   |.|.||.|||    |||||          |||..||
RBAM_018590__      1 ATGATGAATGCCCTTATCATACAC----GAAAA----------TGGCTTT     36

BSNT_03052___     45 -ATCAGTTCAGG-----ACGTTCCATCAACAAA--GCCTGGATACGGAGA     86
                      ||   ||||||     ||.|      .|||||  |||.|||.||||.||
RBAM_018590__     37 GAT---TTCAGGCAGGCACCT------GACAAAAGGCCGGGAAACGGCGA     77

BSNT_03052___     87 GGTAAAGGTTAAATTAAAATCTGCAGGCCTGAATCATCGTGACTTGTTTC    136
                     .|||||..|.||..|.|||.|.||.||..|.||.||||||||.||||||.
RBAM_018590__     78 AGTAAAAATAAAGCTGAAAACAGCCGGATTAAACCATCGTGATTTGTTTT    127

BSNT_03052___    137 TTATGAAAAAC----AAATCTGAACAAGATCCTCA-CATGA---TA--CT    176
                     |.|||||||||    |||.|.|||          | |||||   ||  ||
RBAM_018590__    128 TAATGAAAAACCACGAAACCGGAA----------ACCATGAATTTACTCT    167

BSNT_03052___    177 GGGTTCTGACGGCGCGGGTATC---ATCGAAGAGATTGGTGAAGGCGT--    221
                     .|||||.|||||||||||.|||   |.||||   ||.||..|.|||||  
RBAM_018590__    168 CGGTTCAGACGGCGCGGGAATCGTAACCGAA---ATAGGACACGGCGTCC    214

BSNT_03052___    222 -GAAAAATGTTACTGTTCAGACAGAAGTAGTCATTTTCCCGACATTGAAC    270
                      |....|| ||||||  ||..|||||||..||||...||||....||||.
RBAM_018590__    215 GGTCTCAT-TTACTG--CATGCAGAAGTCATCATCAACCCGGTGCTGAAT    261

BSNT_03052___    271 TGGGATTTGAC---AGAAAATGTTCCACCTGTACCTGAGATTCTGGGAGG    317
                     |||.|   |||   .||..|.||.||..|.||.|||||.|||.|.||.||
RBAM_018590__    262 TGGAA---GACTGTTGAGGACGTACCGGCCGTCCCTGACATTTTAGGCGG    308

BSNT_03052___    318 TCCTTCGGACGGAACACTTGCTGAATATGTGATCATTCCTTCACAAAATG    367
                     |||....|||||||||.||.|....|||||.|||.|||||....||||||
RBAM_018590__    309 TCCGAGCGACGGAACATTTTCACCTTATGTCATCGTTCCTGAGGAAAATG    358

BSNT_03052___    368 C--------AATCAAAAAACCTGCTTATTTATCTTGGGAAGAAGCGGGCG    409
                     |        ||.|..||.|||||        .|||||||.||||||||||
RBAM_018590__    359 CCGTTTTAAAACCCGAACACCTG--------ACTTGGGAGGAAGCGGGCG    400

BSNT_03052___    410 TTTTACCTTTATCCGCTTTAACCGCATATCGGGCCTTGTTTACAAAGGGG    459
                     |..|.||.|||||.||.||||||||.|||||.|||||.||||||||.||.
RBAM_018590__    401 TGCTGCCGTTATCAGCATTAACCGCTTATCGCGCCTTATTTACAAAAGGA    450

BSNT_03052___    460 CAATTAAAAAAAGGCGAGCATCTATTGATACCCGGCATCGGCAGCGGTGT    509
                     |||||||||||||||||.|||||..|..|.||.||||||||.|||||.||
RBAM_018590__    451 CAATTAAAAAAAGGCGAACATCTTATCCTTCCGGGCATCGGAAGCGGCGT    500

BSNT_03052___    510 AGCAACCTACGCTTTATTTATGGCTAAGGCGATTGGGGCAACAGTAAGCG    559
                     .|||||.|||||.|||||.|||||.||.||.||.||.||.|||||.||||
RBAM_018590__    501 GGCAACATACGCCTTATTAATGGCAAAAGCTATCGGAGCGACAGTCAGCG    550

BSNT_03052___    560 TGACCTCCCGCAGTGAGGAGAAAAGAAAAAAGGCGCTGAAATTAGGTGCT    609
                     |.||||||||||||||..|.||||.|.|||..||.|||..||..|||||.
RBAM_018590__    551 TCACCTCCCGCAGTGAAAACAAAAAACAAACCGCACTGTCATACGGTGCA    600

BSNT_03052___    610 GATTACGCATTTGACAGCTACAGCAATTGGGATGAGCAGTTGCAGGGAAA    659
                     ||....||..|||||||||||.|..|.|||.|||||..|.||.|.||..|
RBAM_018590__    601 GACCGGGCGATTGACAGCTACGGTGACTGGAATGAGGCGCTGAATGGCGA    650

BSNT_03052___    660 AAAGGCGGATGTTGTTCTTGACAGCATAGGACCTGCCCTCTTTTCGGAAT    709
                     |||.||.|||.|..|.||||||.|..||||.||.|||.|.|||   .||.
RBAM_018590__    651 AAAAGCAGATATCATACTTGACGGTGTAGGCCCCGCCTTATTT---CAAC    697

BSNT_03052___    710 ACTTCC--GCCATGTA--AAACCAAATGGCCGTATTGTCAGCTTTGGGGC    755
                     |||..|  |.||| ||  |||||.||||||||.||.||.|..||.||.||
RBAM_018590__    698 ACTATCTTGACAT-TATGAAACCGAATGGCCGGATCGTAACATTCGGCGC    746

BSNT_03052___    756 AAGCTCAGGGGATAATCTCAGTTTTCCGGTGCGTTCTCTATTCTTTCCTC    805
                     .||.|||||.|||.|.|||.|.|||||..|.||.||.||.||.|||||.|
RBAM_018590__    747 CAGTTCAGGCGATCAGCTCGGATTTCCTATTCGCTCGCTGTTTTTTCCGC    796

BSNT_03052___    806 AGGTCAATGTTTTGGGAACCTCGATGGGAAGCGGTGAGGAATTTCAAGCT    855
                     ||.|..||.||.|.||.||.||.|||||||||..||||||||||...|.|
RBAM_018590__    797 AGATTCATATTCTCGGTACATCAATGGGAAGCAATGAGGAATTTGCGGAT    846

BSNT_03052___    856 ATGCTCGCTTTCATTGACAAACATAAGCTGCGG-------CCTGTAATTG    898
                     |||||.|    .||||..||||   .|||||||       ||..|.||.|
RBAM_018590__    847 ATGCTGG----AATTGGTAAAC---CGCTGCGGCATCCGTCCCATTATCG    889

BSNT_03052___    899 ACCGGATATATCCTTTAGAAAAAGCATGTGAAGCA---------TATAAA    939
                     ||||.||.||.|||.|        || ||||||||         |.|||.
RBAM_018590__    890 ACCGCATGTACCCTCT--------CA-GTGAAGCAGCTGCCGCTTTTAAC    930

BSNT_03052___    940 AGAATGCAGGAAGGCAGACAGTTTGGAAACATCGG-GATCGTAATGGA--    986
                     |||||||.||||||..|.|||||.||.||.||||| ..|||| .||||  
RBAM_018590__    931 AGAATGCGGGAAGGACGGCAGTTCGGCAATATCGGCTTTCGT-TTGGATG    979

BSNT_03052___    987 -ATAA    990
                      .|||
RBAM_018590__    980 TCTAA    984


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