Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03072 and RBAM_018730

See Amino acid alignment / Visit BSNT_03072 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_03072___yoxB.1.9828.seq
#    -bsequence dna-align/RBAM_018730___yoxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03072___yoxB-RBAM_018730___yoxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03072___yoxB-RBAM_018730___yoxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03072___yoxB
# 2: RBAM_018730___yoxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity:     499/880 (56.7%)
# Similarity:   499/880 (56.7%)
# Gaps:         227/880 (25.8%)
# Score: 1269.0
# 
#
#=======================================

BSNT_03072___      1 ATGATT-------GTAAAC--------CA-------CAGTTGCTTAAAGG     28
                     ||||||       ||.|.|        ||       |||..|||||||| 
RBAM_018730__      1 ATGATTTGCGATCGTGAGCGGCTTGCGCATTTTTTGCAGCAGCTTAAAG-     49

BSNT_03072___     29 AGTTCGCAGAAAAACTACATTCTCTTCCCTCTTC------ACTTACAAAG     72
                                      ||.|.|||    |||||      ..|||||||.
RBAM_018730__     50 -----------------CACTATCT----TCTTCGGTAGGGTTTACAAAA     78

BSNT_03072___     73 TCGGATTTACTTATT-----TCTCCATTTCATCTCCATCAAGAA---AAT    114
                     ||||||||.||.|.|     |.||||||| |.||     |||.|   |  
RBAM_018730__     79 TCGGATTTGCTGACTCCGGCTTTCCATTT-AGCT-----AAGGACGGA--    120

BSNT_03072___    115 GAACTTGACATCTACTATTCACCTCATAATGAATATATCAATCGGACTGC    164
                     ||.||.||..|.||.|||||.|||||||||||||||||.||.|   ||  
RBAM_018730__    121 GATCTGGATTTGTATTATTCGCCTCATAATGAATATATTAACC---CT--    165

BSNT_03072___    165 TA------CGATTGTGATTGCCGGGATCACGCCGGGTTTTTCCCAGATG-    207
                     ||      || |||..|||.||||.|||||.||.|||||||..||.||| 
RBAM_018730__    166 TATGCAGTCG-TTGCCATTTCCGGAATCACACCCGGTTTTTTTCAAATGC    214

BSNT_03072___    208 -----------AAAACAGCGTACGAAACAGCAGTCGAAAGTCTGCGGCAG    246
                                ||||.||    ||..|||||..|..||||        |.
RBAM_018730__    215 AGCTGGCTTACAAAAAAG----CGGCACAGCTTTTAAAAG--------AT    252

BSNT_03072___    247 GGCCGCACTCTTGAGCAAATGGCGGTA------GATACAAAAATAGCAGC    290
                     |||...|||||||   |||   ||.||      ||.|||||||.|||.||
RBAM_018730__    253 GGCGAAACTCTTG---AAA---CGATAGCCTATGAAACAAAAAAAGCGGC    296

BSNT_03072___    291 GGGTTTCTCCGGGTCGATGAGACATAACCTTATCACCATGCTGGATTTAT    340
                     .||..|.|||||.||.|||||.||.|||.|.|||...|||||..||..||
RBAM_018730__    297 CGGACTTTCCGGTTCAATGAGGCAGAACATCATCGAAATGCTTAATGAAT    346

BSNT_03072___    341 GCGGGCTGCCG--CAAGCTT----TTG-GCATTCAAAGCGCAGCAAAACT    383
                     ||||.||||||  |..||||    ||| |.|||||...||        .|
RBAM_018730__    347 GCGGTCTGCCGGCCGCGCTTCACGTTGAGGATTCATCCCG--------GT    388

BSNT_03072___    384 T-TTTGGAGAATT----ACGGCATATGCTCCATACAACTTCCGTTATTAA    428
                     | ||||    |||    ||||.|..|.||.||||||||.||||||||.||
RBAM_018730__    389 TATTTG----ATTCAAAACGGGAGCTTCTTCATACAACGTCCGTTATCAA    434

BSNT_03072___    429 ATATCCTG-TCTTTATCCAGCAAAAAAACTATACCGGATACAAACCGGCC    477
                     |.|.|||| |.||||| .|.||.|||||||||||.|||.|....|||||.
RBAM_018730__    435 ACACCCTGTTTTTTAT-AAACAGAAAAACTATACGGGACATCGGCCGGCA    483

BSNT_03072___    478 ATCA----CTC-GCTCTCCT-ATCC--TAAGC----ACCTATGCTTTTGG    515
                     ||||    .|| |||||.|| |.||  ||.||    ||  |||.|||   
RBAM_018730__    484 ATCAGCAGGTCAGCTCTTCTCAGCCGTTACGCGCTGAC--ATGTTTT---    528

BSNT_03072___    516 GCACTTCCCTGCGGAGCT--TAATCATGTGACGGGACCAGCTCTTCTCAT    563
                            ||.|..||..|  .|||.|||..|..||||  ..|||.||.||
RBAM_018730__    529 -------CCGGATGAAATAGAAATGATGAAAAAGGAC--ATTCTGCTTAT    569

BSNT_03072___    564 TCCGTTAGGAAAAGCGGCCGAAACAGTGTG-TGAAACAT--TGATCAGAC    610
                     .||..|.||.|||||.||.|||.|||..|| .|   |||  |||  ||| 
RBAM_018730__    570 CCCTCTCGGCAAAGCAGCAGAATCAGCCTGCCG---CATGCTGA--AGA-    613

BSNT_03072___    611 AGCACAGCCTTCAGAATTTGATTTGC-------CTTAACGGCTTTCCCCA    653
                     ||.||.|    ||||||..|...|||       ||..|.|||||.||.||
RBAM_018730__    614 AGAACGG----CAGAATGGGTCATGCGGTCATTCTGGAAGGCTTCCCGCA    659

BSNT_03072___    654 TCCATCAGGCGCGAACGGCCATCGTTTGAAACAA-TTCAGCAAAAACAAA    702
                     |||.||.||.||.|||||.||||||||.|||||| |||| |.||||||||
RBAM_018730__    660 TCCGTCCGGAGCAAACGGACATCGTTTCAAACAATTTCA-CGAAAACAAA    708

BSNT_03072___    703 GAGCAACTAGAAAC----ACAAATTCGTTCCTTTGCTGCATTGTTTGATT    748
                        ||| |.|..||    ||||||||....||||||.|        |.||
RBAM_018730__    709 ---CAA-TCGTTACGTGAACAAATTCAGCGCTTTGCCG--------GGTT    746

BSNT_03072___    749 TC-------GCTATAGAAAAGAGGAAATAA    771
                     ||       |||.||.              
RBAM_018730__    747 TCTTCAGCAGCTGTAA--------------    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03072 and RBAM_018730

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
