Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03097 and RBAM_018820

See Amino acid alignment / Visit BSNT_03097 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_03097___yobK.1.9828.seq
#    -bsequence dna-align/RBAM_018820___yobK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03097___yobK-RBAM_018820___yobK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03097___yobK-RBAM_018820___yobK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03097___yobK
# 2: RBAM_018820___yobK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 518
# Identity:     321/518 (62.0%)
# Similarity:   321/518 (62.0%)
# Gaps:         112/518 (21.6%)
# Score: 895.5
# 
#
#=======================================

BSNT_03097___      1 ATGATTTATTCGAAGGTTGAGAATTTTATTAATGAAAATAAACAAAAT--     48
                     |||                 ||.|||||||  |.|||.|||| |.|||  
RBAM_018820__      1 ATG-----------------GATTTTTATT--TAAAAGTAAA-AGAATTC     30

BSNT_03097___     49 ---GCT-ATATTTACAGAAGGCGCAAGTCATG-AAAACATT-----GGTC     88
                        ||| |||.|          ||||   |.| ||||.|||     |||.
RBAM_018820__     31 ATAGCTGATAAT----------GCAA---AAGAAAAAGATTTTACGGGTG     67

BSNT_03097___     89 GCATTGAAGAAAACCTCCAAT------------GC--GATCTTC------    118
                     |.||||.||||.|  |..|||            ||  |||||||      
RBAM_018820__     68 GGATTGGAGAAGA--TAAAATTTTAAAAATTGAGCAAGATCTTCAAGTCA    115

BSNT_03097___    119 -----CCA-ACAGTTATAAATGGTTT-TTAGAAAAATACGGTGCTG--GT    159
                          ||| |.||.||.||||||||| |||| ||||||.|||.|||  |.
RBAM_018820__    116 CGTTGCCAGATAGCTACAAATGGTTTCTTAG-AAAATATGGTTCTGGCGG    164

BSNT_03097___    160 GGTTTAT----TCGGTGTTTTAGTTTTAGGTTACAACTTTGATCATGCAT    205
                     |||||||    ||   |.||||   |||||.||..|.||||....|||.|
RBAM_018820__    165 GGTTTATGGAATC---GATTTA---TTAGGCTATGATTTTGGCGGTGCTT    208

BSNT_03097___    206 CAGTTGTAAATAGAACTAATGAATATAAAGAACACTATGGCCTTACTGA-    254
                     ||||||||.|.|.|||.|..||||||.|.|||.| ||.||..||.|..| 
RBAM_018820__    209 CAGTTGTAGAAACAACCAGGGAATATCATGAATA-TAGGGGATTGCCAAG    257

BSNT_03097___    255 TGGACTT-GTGGTTATTGAAGATGTTGATTACTTTGCTTACTGTCTAGAT    303
                     ||| ||| ||.||.||.|||.|||||||||..||||..||.|||.|||||
RBAM_018820__    258 TGG-CTTAGTAGTCATAGAACATGTTGATTTTTTTGGGTATTGTTTAGAT    306

BSNT_03097___    304 ACAAATAAAATGAA---AGACGGAGAATGCCCTGTAGTTGAATGGGATAG    350
                     ||.||||||||.||   .||.||||||||.||.||.||| |.|.|||   
RBAM_018820__    307 ACCAATAAAATCAACAGTGAAGGAGAATGTCCAGTTGTT-ATTTGGA---    352

BSNT_03097___    351 GGT-AAT----TGGTTATCAAGA---TACTGTTGCAGACAGCTTTATTGA    392
                      || |||    |||.|||.||||   ||.|..|||   |...|||||..|
RBAM_018820__    353 -GTGAATTCGGTGGCTATAAAGAACTTAATTCTGC---CCATTTTATAAA    398

BSNT_03097___    393 ATTTTTTTATAATAAGA-TTCAGGAAGCGAAAGATGACTGGGATGAGGAT    441
                     .||.||||||.| |||| ||||.||...||||||..|||||||.||.|||
RBAM_018820__    399 GTTCTTTTATGA-AAGACTTCATGAGATGAAAGAAAACTGGGAAGAAGAT    447

BSNT_03097___    442 GAAGACTGGGACGATTAA    459
                     |.||||||||||||||||
RBAM_018820__    448 GCAGACTGGGACGATTAA    465


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.