Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03102 and RBAM_018840

See Amino acid alignment / Visit BSNT_03102 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_03102___csaA.1.9828.seq
#    -bsequence dna-align/RBAM_018840___csaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03102___csaA-RBAM_018840___csaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03102___csaA-RBAM_018840___csaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03102___csaA
# 2: RBAM_018840___csaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     251/336 (74.7%)
# Similarity:   251/336 (74.7%)
# Gaps:           6/336 ( 1.8%)
# Score: 879.0
# 
#
#=======================================

BSNT_03102___      1 ATGGCAGTTATTGAAGACTTTGAGAAATTGGATATCAGAACGGGAACAAT     50
                     ||||||||.||||||||.|||...||..|.|||.||||||..|||||..|
RBAM_018840__      1 ATGGCAGTCATTGAAGATTTTATCAAGCTTGATCTCAGAATAGGAACGGT     50

BSNT_03102___     51 TGTAAAAGCGGAAGAATTTCCTGAAGCAAGGGTACCGGCTATCAAGCTTG    100
                     .|||||||||||||.||||||.|||||||.|||.|||||.||.|||.|..
RBAM_018840__     51 CGTAAAAGCGGAAGTATTTCCGGAAGCAAAGGTGCCGGCCATTAAGATGA    100

BSNT_03102___    101 TGATAGATTTTGG-GACTGAAATCGGCATAAAACAATCGAGCGCACAAAT    149
                     ..||||||||.|| || .||.||||||||.||||||||.|||||.||.||
RBAM_018840__    101 CAATAGATTTCGGCGA-AGAGATCGGCATGAAACAATCAAGCGCCCAGAT    149

BSNT_03102___    150 CACGAAGCGTTACAAGCCGGAAGGTCTCATCAACAAGCAAGTCATAGCAG    199
                     .||.||.||.|||.|.||||..|.|||.|....||..||.||.|.|||..
RBAM_018840__    150 TACAAAACGGTACGAACCGGGTGATCTGACGGGCAGACAGGTGACAGCTA    199

BSNT_03102___    200 TCGTGAACTTTCCGCCCCGCCGAATCGCCGGATTTAAATCGGAAGTCTTG    249
                     |.||.|||||||||||.||.||.||||||||||||||.||.|||||..|.
RBAM_018840__    200 TTGTCAACTTTCCGCCGCGGCGGATCGCCGGATTTAAGTCAGAAGTTCTC    249

BSNT_03102___    250 GTCCTCGGCGGCATACCCGG-CCAGGGCGACGTCGTCCT-TTTGCAGCCG    297
                     ||.||||||||||| ||||| ..|.||.|||||.||||| .||.| |||.
RBAM_018840__    250 GTTCTCGGCGGCAT-CCCGGAAAAAGGAGACGTTGTCCTGCTTAC-GCCA    297

BSNT_03102___    298 GATCAGCCTGTCCCAAACGGCACAAAAATCGGATAA    333
                     ||.|||.|.||.||.|||||.||.||||||||||||
RBAM_018840__    298 GAGCAGACAGTACCGAACGGAACGAAAATCGGATAA    333


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