Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03106 and RBAM_018860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03106___yobS.1.9828.seq
# -bsequence dna-align/RBAM_018860___yobS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03106___yobS-RBAM_018860___yobS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03106___yobS-RBAM_018860___yobS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03106___yobS
# 2: RBAM_018860___yobS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 365/631 (57.8%)
# Similarity: 365/631 (57.8%)
# Gaps: 119/631 (18.9%)
# Score: 880.0
#
#
#=======================================
BSNT_03106___ 1 ATGTCACCAAGAATAGGTTTGACCCAAAAAATGATTAT--AGACGCTGCA 48
||||||||.|||.|.||..|||.||...|.|||| ||| ||| ||||||
RBAM_018860__ 1 ATGTCACCGAGAGTCGGAATGAGCCTTGACATGA-TATTGAGA-GCTGCA 48
BSNT_03106___ 49 GCGGAGATTGCCGATCAGGAAGGGGTAAATGGTGTCTCACTTGCGGCACT 98
||.|..||.||.||..|..|||||.|.||.|..||..|.||||||||..|
RBAM_018860__ 49 GCAGGCATCGCTGACGAAAAAGGGCTGAACGAAGTGACGCTTGCGGCTGT 98
BSNT_03106___ 99 TTC--------TAAA---AAAATGAATGTGCGTCCCCCGTCATTGTATAA 137
|.| |||| |||| ||.||.||..|.||.||
RBAM_018860__ 99 TGCAAAGTCCTTAAACGTAAAA-----------CCGCCTTCCCTTTACAA 137
BSNT_03106___ 138 CCATATCAACGGGCTGCAAGCGATCAGAGCAGAACTTGCTGTTAGAGGAC 187
...|.||||.||.||.||||..||.|.|.||||.||.|||||....||..
RBAM_018860__ 138 TTTTGTCAATGGCCTTCAAGGAATTAAAACAGAGCTGGCTGTCTCCGGTT 187
BSNT_03106___ 188 TGACAAAGCTTTTTGATCAAATGGCGGACTCCGTAACCGAACGA---AAG 234
|.||.|.|.|.|.|||..|||||||||.|||.| |.|||.|| |.|
RBAM_018860__ 188 TAACTATGTTATATGAAAAAATGGCGGCCTCTG---CAGAAGGACTGACG 234
BSNT_03106___ 235 GGAGATTCCGCGATGCTTTCTTTAGCACATGCATATGTTGATTTTGCAAT 284
||.||..|.||..|||||.||.|.||..||||.|||.|..||||.||
RBAM_018860__ 235 GGCGAAACGGCTTTGCTTGCTCTCGCCGATGCCTATATCAATTTCGC--- 281
BSNT_03106___ 285 TGAA---AATCCCGGATATTATGAAGCGGCTCTGCTTAAGGTTCAGGACA 331
.||| ||||||||||..|||||.||..|..|.|..|| ||.|
RBAM_018860__ 282 CGAAGCCAATCCCGGATTATATGACGCAACATTTCAAAA-------GATA 324
BSNT_03106___ 332 AA-------CGGATGGA-AATC-GTC---TCTGACCAAATTGT----CTG 365
|| |||||.|| |||| ||| .||| .|||| ||
RBAM_018860__ 325 AAAGATGGCCGGATTGAGAATCTGTCAAGCCTG-----CTTGTAGAGCT- 368
BSNT_03106___ 366 TCTTGTGACGAAGCT----GCTCATTGAAAACGGCTATGCA-AG--TGAA 408
|.||||.|.|.|||| ||| |||||.|||||| || ||
RBAM_018860__ 369 TGTTGTCAGGCAGCTGACAGCT-------AACGGATATGCACAGTCTG-- 409
BSNT_03106___ 409 AAGACTGCCATTCATGCGACAAGGGGGCTCAGAAGCCTGCTGCATGGCTT 458
|.|||||.||||||||..|.||.||.||.||.|||||.||.||.||.||
RBAM_018860__ 410 -ACACTGCGATTCATGCTGCGAGAGGACTGAGGAGCCTTCTTCACGGATT 458
BSNT_03106___ 459 TACTGTTTTAATCGCAAA-AGA-AGCATTTGAACGTGAGGAGGA-CATTT 505
|.|.||.||.| |.||| ||| .||||||||| |.|...|.| ||.||
RBAM_018860__ 459 TGCCGTGTTGA--GAAAACAGAGTGCATTTGAA--TTAACCGAATCAATT 504
BSNT_03106___ 506 TA-GAAAGCCTGTCATTTTCA---------ATTCGGACATTTTTGTCAGG 545
.| |||||||.|...|||.|| .|||..|.|..|||| ||||
RBAM_018860__ 505 AAGGAAAGCCGGAAGTTTGCAGTTGTTGCTTTTCTAAGAGGTTTG-CAGG 553
BSNT_03106___ 546 ATTATTAATAAATAATAAAAATATTATGTAA 576
| .|...||.|||||
RBAM_018860__ 554 A----GAGGGAACAATAA------------- 567
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