Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03123 and RBAM_018940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03123___yocD.1.9828.seq
# -bsequence dna-align/RBAM_018940___yocD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03123___yocD-RBAM_018940___yocD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03123___yocD-RBAM_018940___yocD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03123___yocD
# 2: RBAM_018940___yocD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity: 714/1016 (70.3%)
# Similarity: 714/1016 (70.3%)
# Gaps: 76/1016 ( 7.5%)
# Score: 2381.0
#
#
#=======================================
BSNT_03123___ 1 ATGTACGCCTC----AAAACTGAAAAAGGGAGACGAAATCCGGATCGTGT 46
.|||| || ||||.|||||||.||.||||..||.||.||.||||
RBAM_018940__ 1 TTGTA----TCCGGAAAAATTGAAAAAAGGTGACGGCATTCGTATTGTGT 46
BSNT_03123___ 47 CTCCCGCGACCAGCATGTCTATATTATCAAATGAAGCAA---AAATTC-- 91
||||.||.||.||||||||..|..|.|||.||||| || ||||.|
RBAM_018940__ 47 CTCCGGCCACAAGCATGTCCGTTATGTCAGATGAA--AATATAAATGCCG 94
BSNT_03123___ 92 --AAG-CAAAAACGGCGTTAGAACGCTTAGGTTATCGGGTAACCATCGCT 138
||| |||||..||.| ||.| |.||.|.|.|.||..|..|..|.
RBAM_018940__ 95 CGAAGACAAAATTGGAG---GAGC---TGGGCTTTTGTGTCTCTTTTTCA 138
BSNT_03123___ 139 GAACACGCAAATGAATGTAACGAATTTGATTCATCCTCTATCGAGTCAAG 188
||..|.||.||.|||...||.||||||||||||||.||.||.||.||..|
RBAM_018940__ 139 GAGAATGCGAAAGAAATAAATGAATTTGATTCATCATCCATTGAATCGCG 188
BSNT_03123___ 189 AGTCCAAGATCTGCACGCTGCCTTTTTTGATCCAGGCGTCAAAGCGATTT 238
.||.|..||||||||||..||.||...|||.||.|.|.||||||||||||
RBAM_018940__ 189 TGTACGGGATCTGCACGAGGCTTTCGCTGACCCTGACATCAAAGCGATTT 238
BSNT_03123___ 239 TAACGACACTCGGAGGGTTTAATTCAAATCAGCTGCTGCGTTATCTTGAT 288
|.|||||||||||.|||||..|.||||||||||||||.||.|||||||||
RBAM_018940__ 239 TGACGACACTCGGCGGGTTCCAATCAAATCAGCTGCTCCGCTATCTTGAT 288
BSNT_03123___ 289 TACGAGAAAATCAAACGACATCCAAAAATTCTGTGCGGCTATTCCGATAT 338
||.||.||.|||||.||.|||||.|||||.||.|||||||||||.|||||
RBAM_018940__ 289 TATGAAAACATCAAGCGGCATCCGAAAATCCTTTGCGGCTATTCAGATAT 338
BSNT_03123___ 339 AACCGCTCTTTGCAACGCTATTTATCAAAAAACGGGTCTTGTTACGTATT 388
.||||||||..||.|.||.||.|||||||||||.||.|||.||||.||||
RBAM_018940__ 339 TACCGCTCTCGGCCATGCCATATATCAAAAAACCGGCCTTATTACATATT 388
BSNT_03123___ 389 CAGG-CCCCTTCTTTTCAACATTTGCAATGAAAAAAGGGCTTGATTATAC 437
|.|| ||||.| |||||..|||||||.||||||||||||||.||.|||||
RBAM_018940__ 389 CCGGTCCCCAT-TTTTCTTCATTTGCCATGAAAAAAGGGCTGGACTATAC 437
BSNT_03123___ 438 ACAAGAGTATTT---TCTTTCT-----TGCTGCGCTTCGGACGACCCGTT 479
|| || ||||||| |||||.|||||.|||..|||||.
RBAM_018940__ 438 -CA-------TTAACTCTTTCTTGGCCTGCTGTGCTTCTGACAGCCCGTA 479
BSNT_03123___ 480 TG----AAATTCTTCCTTCAAGTGAGTGGAGCGATGACCGCTGGTTTTTG 525
|| ||| .||||||...||||||||.|||||....||||.||||
RBAM_018940__ 480 TGAGGTAAA----GCCTTCATCCGAGTGGAGTGATGATAAATGGTATTTG 525
BSNT_03123___ 526 GATCAAGAAAACAGGCGTTTTTATCCTAATAACGGCCCTGTTGTAATCCA 575
.|.||.||..||||.||||||||||..|||...||.||..|.||.||.||
RBAM_018940__ 526 AACCAGGAGGACAGACGTTTTTATCGGAATCCGGGACCGCTCGTTATTCA 575
BSNT_03123___ 576 AGAAGGTTATGCGGAAGGTACTTTAATTGGCGGAAACTTATGCACGCTTA 625
|...||.|||||||||||.||..|.||.||.|||||..||||||||||.|
RBAM_018940__ 576 ACCCGGATATGCGGAAGGAACACTGATCGGAGGAAATCTATGCACGCTGA 625
BSNT_03123___ 626 ATTTGCTGCAGGGAACGGAGTATTTTCCTGAAACAGAACATACT-ATTTT 674
||.|.||||||||.||.||.||.|||||.||.|..||||| |.| |||.|
RBAM_018940__ 626 ATCTTCTGCAGGGCACCGAATACTTTCCGGAGATGGAACA-AGTGATTCT 674
BSNT_03123___ 675 ATTGATTGAAGATGATTATATGTCAGACATCCACATGTTTGACCGCGATC 724
.||.||.|||||||||.|||||||.|||||.||.|||||||||||.|||.
RBAM_018940__ 675 GTTTATAGAAGATGATCATATGTCGGACATTCATATGTTTGACCGGGATT 724
BSNT_03123___ 725 TGCAATCACTCATCCACCTCCCAGCTTTTTCACATGTAAAGGCGATTTTG 774
||||.|||||||||||.||.||.|||||||||...||.||||..|||.|.
RBAM_018940__ 725 TGCAGTCACTCATCCATCTTCCCGCTTTTTCAGCCGTGAAGGGAATTGTC 774
BSNT_03123___ 775 ATCGGCAGATTTCAGAAGGCATCAAACGTATCAATGGA---TCT-TGTAA 820
|||||..|.||.|||.|.||.|||||.||.||...||| ||| .||
RBAM_018940__ 775 ATCGGACGTTTCCAGCATGCTTCAAATGTGTCTGAGGAGGCTCTGCGT-- 822
BSNT_03123___ 821 AAGCCATGATCGAAACAAAAAAAGAATTATCCGGCATCCCGGTCATCGCA 870
|||.|.|||...||||||.|||||.|.||...|||.||.||.||||||
RBAM_018940__ 823 --GCCGTCATCCGTACAAAAGAAGAACTGTCATCCATGCCTGTTATCGCA 870
BSNT_03123___ 871 AATATAAATGCCGGACATACCTCGCCAAT--TGCCACGTTCCCTATAGGA 918
|||....||..|||.||.|||||.||..| || ||.|||||.||.|||
RBAM_018940__ 871 AATGCTGATTTCGGCCACACCTCCCCTTTGATG--ACATTCCCGATCGGA 918
BSNT_03123___ 919 GGAACATGCAGGATTGAAGCTATTTCGGGTACA------TCACGAATATG 962
||||||||||||||.||||| |||.| || ..|||.|||||
RBAM_018940__ 919 GGAACATGCAGGATAGAAGC-----CGGCT-CAGAAGGCGGACGGATATG 962
BSNT_03123___ 963 GATTGATAAACATTAA 978
|||.|||...||||||
RBAM_018940__ 963 GATCGATCGGCATTAA 978
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