Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03131 and RBAM_018970

See Amino acid alignment / Visit BSNT_03131 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_03131___yocI.1.9828.seq
#    -bsequence dna-align/RBAM_018970___yocI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03131___yocI-RBAM_018970___yocI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03131___yocI-RBAM_018970___yocI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03131___yocI
# 2: RBAM_018970___yocI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1815
# Identity:    1368/1815 (75.4%)
# Similarity:  1368/1815 (75.4%)
# Gaps:          75/1815 ( 4.1%)
# Score: 4982.0
# 
#
#=======================================

BSNT_03131___      1 ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAA     50
                     |||.|..|.|.||||||||||||||||||.|||||||||||.||.|| .|
RBAM_018970__      1 ATGCTGGAGAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGA-CA     49

BSNT_03131___     51 GT-TTCGGAGC-GGCCAAGATGAAGCG-----ATCCGCTTGGTGACGGAA     93
                     || ||| |.|| ||||||.|..|.|||     |||.| |||..||  |||
RBAM_018970__     50 GTCTTC-GCGCGGGCCAAAAGCAGGCGATACAATCAG-TTGCAGA--GAA     95

BSNT_03131___     94 GCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGAT    143
                       .||..||||.||||.|||||||||||||||.||.|||||.|||||.||
RBAM_018970__     96 --AAGAAAAAACACGGTCTGCATTATGCCGACAGGGGGCGGAAAATCAAT    143

BSNT_03131___    144 TTGCTATCAAATTCCGGCATTAATGTTTGAAGGGACGACGATCGTCATAT    193
                     .||||||||.|||||.|||.|..||||||||||.||.||.|||||.||.|
RBAM_018970__    144 CTGCTATCAGATTCCCGCACTGCTGTTTGAAGGAACCACAATCGTTATTT    193

BSNT_03131___    194 CACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAAGCG    243
                     |.||..|.||||||||.|||||.||||||||.||.|||.|.|||||||||
RBAM_018970__    194 CCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAAGCG    243

BSNT_03131___    244 GGGATTAACGCCGCCTACATTAACAGCACACA-ATCCAATCAG-GAAATA    291
                     ||.||....||.||.||.|||||||||||.|| |  |||.|.| ||.||.
RBAM_018970__    244 GGTATCGCGGCAGCTTATATTAACAGCACCCAGA--CAAGCCGTGACATT    291

BSNT_03131___    292 TATGAGAGGCTGAACGGACTCAAAGAAGGGGCTTATAAGCTTTTTTACAT    341
                     .|||||.|.||||.|||..|.|||.||||||||||...|||.||||||||
RBAM_018970__    292 CATGAGCGCCTGACCGGTTTGAAACAAGGGGCTTACCGGCTCTTTTACAT    341

BSNT_03131___    342 TACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCA    391
                     .|||||.|||||..|.||.||..|.||.||.||.|..||..|||||    
RBAM_018970__    342 CACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAG----    387

BSNT_03131___    392 TAGAT----GTTCCTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCA    437
                     .|.||    ||||||.|.|||||.||.|||||.||.||||||||.||.||
RBAM_018970__    388 AATATTACGGTTCCTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCA    437

BSNT_03131___    438 ATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATCTTGTTCC    487
                     ||||||.||||||||||||||.||.|||.|||||||.||||||.|.||..
RBAM_018970__    438 ATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATCCTTTTTA    487

BSNT_03131___    488 GTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACA    537
                     .|||||||.|.||...|||.||.|||||.||.|||||.||.||.||.||.
RBAM_018970__    488 ATGAATTAAAAGAACCGCCCGTCATCATCGCATTAACGGCGACGGCTACG    537

BSNT_03131___    538 CCCGAGGTTCATGATGATATTTGCAAACAGCTGCATATTCAAAAAGAAAA    587
                     ||.||||||||||||||.||.|||||||||||.||||||.|.||||||.|
RBAM_018970__    538 CCTGAGGTTCATGATGACATCTGCAAACAGCTTCATATTAAGAAAGAACA    587

BSNT_03131___    588 CACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAA    637
                     .||.||||||||.||.|||.|..|||||||||||||.|||||||||||||
RBAM_018970__    588 AACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAA    637

BSNT_03131___    638 AAGGAGAAAATAAAGATCGGTTTATAGA-CGAATATGTGCAAAACAACAG    686
                     |.||.|||||.|||||.||||||||.|| || .||..||.||||.||.|.
RBAM_018970__    638 AGGGCGAAAACAAAGACCGGTTTATCGAGCG-GTACCTGGAAAAAAATAA    686

BSNT_03131___    687 GCATGAAGCAGGAATTGTCTATACAGCGACCAGAAAAGAAGCTGATCGGA    736
                     .||.|||||.||.|||.|.|||||||||||.|||||||||.|.||.||..
RBAM_018970__    687 ACACGAAGCCGGCATTATATATACAGCGACAAGAAAAGAAACCGACCGTT    736

BSNT_03131___    737 TATATGAGAGATTGAAACGAA-----ATCAAGTCAGGGCAGGCCGGTATC    781
                     |||||||.|.|||.|||||.|     |||||     .||.|||||.||||
RBAM_018970__    737 TATATGATAAATTAAAACGCAGCGGCATCAA-----TGCCGGCCGTTATC    781

BSNT_03131___    782 ATGGAGGTATGGCTGATGATGAGAGAAAAGAGCAGCAGGAAAGGTTTCTT    831
                     |.||.||..||||.||||||||.||||||||.||||||||..||||||||
RBAM_018970__    782 ACGGCGGATTGGCGGATGATGACAGAAAAGACCAGCAGGAGCGGTTTCTT    831

BSNT_03131___    832 AATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTAT    881
                     ||.|||.||.|.|||||||||||.||.||.||.|||||.||||||||.||
RBAM_018970__    832 AACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAAT    881

BSNT_03131___    882 TGATAA-ATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGAT    930
                     .||||| |.| ||.||||||||.|||.||||.||.||.||.|||||||||
RBAM_018970__    882 CGATAAGAGC-AACATCAGATTCGTTTTGCACGCGCAGATTCCGAAAGAT    930

BSNT_03131___    931 ATGGAAAGCTATTATCAAGAGGCAGGACGAGCTGGACGGGACGGTCTTGC    980
                     |||||.||||||||.|||||.||.|||||.||.||.||.||.||||||..
RBAM_018970__    931 ATGGAGAGCTATTACCAAGAAGCCGGACGGGCCGGGCGCGATGGTCTTAA    980

BSNT_03131___    981 CAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTT   1030
                     |||.||.|||||.|||.|||||||.|||||||||||||||||||||||||
RBAM_018970__    981 CAGCGAGTGTGTGCTCTTGTTTTCGCCGCAGGATATTATGGTGCAGCGTT   1030

BSNT_03131___   1031 TCTTAATTGAGCAAT-------CAGAACATGAAGAGAAACAAAAGCAGGA   1073
                     |.|||||.||.||||       |.||    |||||.||||||||||||||
RBAM_018970__   1031 TTTTAATAGACCAATCGGCCGCCGGA----GAAGAAAAACAAAAGCAGGA   1076

BSNT_03131___   1074 TTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATTGTC   1123
                     |.|.|||||.||||||||.|||||.||.||||||||||||||||||||.|
RBAM_018970__   1077 TCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAGATTGCC   1126

BSNT_03131___   1124 TGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGC   1173
                     |||||||.|||||.||.|.|||||||||.||.||.|||.|..|.||.|||
RBAM_018970__   1127 TGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGC   1176

BSNT_03131___   1174 GGA-CAGTGCGGAAACTGTACCGATACAAGAGCGGCCCATGACGTGACGC   1222
                     ||| || |||||.||.||.||.||||||||..|.|||||||||||.||..
RBAM_018970__   1177 GGAGCA-TGCGGCAATTGCACTGATACAAGGACCGCCCATGACGTCACAA   1225

BSNT_03131___   1223 GGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTT   1272
                     ..||.|||||.|||||.||.||.||.|||||..|.|||||.||.||.||.
RBAM_018970__   1226 AAGAAGCGCAGATGGTATTGTCATGCATCATCAGAATGAATGAGCGCTTC   1275

BSNT_03131___   1273 GGCAAGACGATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGT   1322
                     ||.||.||||||||.||.|||||||||..|||.||.||||||||||||||
RBAM_018970__   1276 GGAAAAACGATGGTGGCGCAGGTGCTTAGCGGGTCAAAAAATAAAAAAGT   1325

BSNT_03131___   1323 TCTTGAAAACGGCTTTTCAG--ACCTCTCAACATACGGGATATTAAAACA   1370
                     .||.|||||||||  |||||  .|||.||.||.|||||.||..|.||.||
RBAM_018970__   1326 GCTGGAAAACGGC--TTCAGCAGCCTGTCCACTTACGGCATTATGAAGCA   1373

BSNT_03131___   1371 CCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACG   1420
                     .|||||||..|..||||||||.||||||||||||||.||||||||.||.|
RBAM_018970__   1374 TCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTCCTTATTTCAGATG   1423

BSNT_03131___   1421 ACTTCATCAGGATGTCAGACGGAACGTTTCCGACTCTTTTTGTCAGTAGT   1470
                     |.|..|||||.|||.|.|||||.||.||||||||.|||.|.||||.....
RBAM_018970__   1424 AATATATCAGAATGGCGGACGGCACATTTCCGACGCTTATGGTCACCCAA   1473

BSNT_03131___   1471 AAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC   1520
                     |||||.|||.||||..||...|||.||....||||.||||||||||||||
RBAM_018970__   1474 AAAGGCAGGGATGTTTTGCTTGGAAAAAGCGCAGTCGCGAGAAAAGAAGC   1523

BSNT_03131___   1521 GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATT--   1568
                     .|||.|.||.||.||..||||.||||||||.||..|||||||  |.||  
RBAM_018970__   1524 CTTACAGGCCGCCGCCGTTACCGAAAATGATGAATTATTTGA--GCTTCT   1571

BSNT_03131___   1569 ---GCG-CATGGTTCGGAAAGAAATTGCGGCTGATCAGGGTGTTCCGCCA   1614
                        ||| |    |.||.|||||.|||||.|||||.|||||.||.||.|||
RBAM_018970__   1572 CCGGCGTC----TCCGCAAAGAGATTGCAGCTGAACAGGGCGTGCCTCCA   1617

BSNT_03131___   1615 TTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCC   1664
                     |||||.||.|||||.||.||.|||||||||||||||||.|..|||| ..|
RBAM_018970__   1618 TTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAAC-TTC   1666

BSNT_03131___   1665 CGTAAA-TGATGATGAACTTTTGTCTATAAAAGGAGTCGGAGAACAAAAA   1713
                     ||.||| .|||.|.||.|||.|.||..|||||||.|||||.|||||||||
RBAM_018970__   1667 CGAAAACAGATCAGGATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAA   1716

BSNT_03131___   1714 AGAGCAAAATACGG-CCGGCTTTTTTTACAAGAAATACAAGCTTATGCAA   1762
                     |||...|||||||| .||| ||||||||.|||||||.|.|..|||||.||
RBAM_018970__   1717 AGATTGAAATACGGAGCGG-TTTTTTTAGAAGAAATCCGAAATTATGTAA   1765

BSNT_03131___   1763 G-GATGACAGACTAA   1776
                     | || .|||||.|.|
RBAM_018970__   1766 GAGA-AACAGAGTGA   1779


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