Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03139 and RBAM_019000

See Amino acid alignment / Visit BSNT_03139 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03139___yocM.1.9828.seq
#    -bsequence dna-align/RBAM_019000___yocM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03139___yocM-RBAM_019000___yocM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03139___yocM-RBAM_019000___yocM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03139___yocM
# 2: RBAM_019000___yocM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity:     344/511 (67.3%)
# Similarity:   344/511 (67.3%)
# Gaps:          62/511 (12.1%)
# Score: 1079.0
# 
#
#=======================================

BSNT_03139___      1 ATGGATTTCGAAAAGATGAAGCAGTGGATGGAATTCGCACAGCAGATGTA     50
                     |||||||||||.|||||||||||||||||||||.|.||.||..|.||||.
RBAM_019000__      1 ATGGATTTCGATAAGATGAAGCAGTGGATGGAAATGGCGCAAAACATGTC     50

BSNT_03139___     51 CGGCGGTGACTTTTGGAAACAGGTATTTGATGAAGACCAA---AAAACCC     97
                     ||||||.||||||||||||.|.||.||||||||.||.|||   |||  .|
RBAM_019000__     51 CGGCGGCGACTTTTGGAAAAACGTTTTTGATGATGAACAACTGAAA--TC     98

BSNT_03139___     98 CTTTTATGACAAATGGCCAATCTCCGTTTCCGTTTGCGCAGCAAGATCAG    147
                     .|||.|    |||.|||||.||||..|||||.|||...|||..||||..|
RBAM_019000__     99 ATTTCA----AAACGGCCATTCTCATTTTCCCTTTCAACAGGGAGATGGG    144

BSNT_03139___    148 C----GAG-GGAAAGGA-GATGCTTCATTTCCGAGCATGGATATTGTAGA    191
                     |    ||| .||||.|| ||||||   |||||....||.||||||||.||
RBAM_019000__    145 CAAATGAGAAGAAATGAGGATGCT---TTTCCTCTTATAGATATTGTGGA    191

BSNT_03139___    192 TACCGTTACGGAAGTACAATTTTTAATTTATCTTCCAGGCTACCGTAAAC    241
                     .|||..|...||..|.|||||||||.|.|||||.||.||||||||.||||
RBAM_019000__    192 AACCCATGATGAGCTCCAATTTTTACTGTATCTGCCCGGCTACCGGAAAC    241

BSNT_03139___    242 AAGACGTTCACATATTATCGTACGGAGATTATTTAGTGGTGAAGGGGCA-    290
                     ||||.|||||..|..|.||.||||||||.|||.|.||.|| ||..|||| 
RBAM_019000__    242 AAGATGTTCAGCTGCTGTCCTACGGAGAATATATCGTCGT-AAAAGGCAC    290

BSNT_03139___    291 GCGCTTTTCCTATTTTAATGAACAGGACTTTCGCCAAAAAGAA----GGG    336
                     |.|....||||.|||||||||||||||.|||    |||.||||    ||.
RBAM_019000__    291 GAGAAAATCCTTTTTTAATGAACAGGATTTT----AAACAGAAGACCGGA    336

BSNT_03139___    337 AGATACGGAAGTTTTGAAAAGAAAA-------TTCCGCTTTCCGATCATC    379
                     |.||||||...||||||||| ||||       ||||||.|||||      
RBAM_019000__    337 AAATACGGCGATTTTGAAAA-AAAACTCGACCTTCCGCATTCCG------    379

BSNT_03139___    380 TTCATGGAAAGA--TGAATGCCA-----TTTTTAAAGACGGAATCCTATA    422
                     .|||.||||.||  .||||| ||     |.||.||||||||.||..||||
RBAM_019000__    380 CTCAGGGAACGAAGGGAATG-CAGGCGGTATTCAAAGACGGGATTTTATA    428

BSNT_03139___    423 CATCACTATTCAAAAA------GACGAAGGTCAAGCGAAAACCATTGTTA    466
                     .||..|.|||...|||      |..||.|  |||||.|    .||..|||
RBAM_019000__    429 TATATCGATTGCTAAACATCTGGGGGATG--CAAGCCA----GATCATTA    472

BSNT_03139___    467 TTGATGATTGA    477
                     |.||.|..|||
RBAM_019000__    473 TCGAAGGCTGA    483


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.